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EPPIcenter/moire

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MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

Is EPPIcenter/moire beginner-friendly?

We have not seen enough recent pull requests from outside contributors to EPPIcenter/moire to say how often they are merged. No beginner-friendly issue is open right now; the list below has the other issues we hold for it.

Stars
8
Forks
9
Open beginner issues
0
Indexed issues
15
Avg merge
12h 25m
Merged PRs (30d)
2
Dominant language
C++
License
GPL-3.0
Last GitHub push
Sep 15, 2026
Latest indexed
Sep 20, 2026
No contributing guide
No code of conduct
Beginner labels
No beginner labels indexed

How to contribute to EPPIcenter/moire

  1. There is no contributing guide, so start from the README and a few recently merged pull requests to see how changes are proposed.
  2. Your contributions will be published under the project's GPL-3.0 license.
  3. Follow the repository to hear when a new beginner-friendly issue opens, or look through the other issues below.
Beginner friendly Everything
Open All

Issues somebody may already be working on are listed last. List everything by date

  • Documentation and release notes for count observation model
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 3/5 1-2 days Newbie friendliness 58/100

    EPPIcenter/moire#50 ·

  • Count-aware simulator and simulation smoke test
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 4/5 3-5 days Newbie friendliness 48/100

    EPPIcenter/moire#49 ·

  • Count Poisson observation model — full MCMC inference path
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 5/5 Over a week Newbie friendliness 38/100

    EPPIcenter/moire#48 ·

  • Count data loading and genotyping initialization
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 4/5 3-5 days Newbie friendliness 48/100

    EPPIcenter/moire#47 ·

  • Observation model interface with binary parity
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 4/5 3-5 days Newbie friendliness 68/100

    EPPIcenter/moire#46 ·

  • PRD: Count-based observation model (alternative to binary error process)
    Open
    • Is something wrong?
    enhancement ready-for-agent

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    EPPIcenter/moire#45 ·

  • Memory issue with very long allele names
    Open
    • Is something wrong?

    Difficulty 4/5 3-5 days Newbie friendliness 30/100

    EPPIcenter/moire#44 ·

  • Select samples for allele frequency estimation
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    EPPIcenter/moire#43 · 1 comment ·

  • take a closer look at adaptation algorithms
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 10/100

    EPPIcenter/moire#41 ·

  • Detect potential data issues
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    EPPIcenter/moire#30 ·

  • add diagnostics for parallel tempering
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    EPPIcenter/moire#29 ·

  • allow for ZINB distributed COI
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 30/100

    EPPIcenter/moire#22 ·

  • add support for multiple populations
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 20/100

    EPPIcenter/moire#21 ·

  • Convenience functions
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    EPPIcenter/moire#7 ·

  • eliminate openmp dependency and use tbb
    Possibly taken Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    EPPIcenter/moire#17 ·

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