BlueBrain/Deep-Atlas

View on GitHub

Stars: 4
Forks: 2
Open beginner issues: 0
Indexed issues: 19

Dominant language: Python
License: Apache-2.0
Last GitHub push: Dec 12, 2023
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

Dimension incompatibility of NRRD files with ITK-snap Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#76 · 1 comment · Opened Sep 25, 2023
GeneInterpolate not accepting border_predictions Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#71 · Opened Oct 25, 2022
Considering a > 0 cutting angle Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/Deep-Atlas#68 · Opened Aug 18, 2022
Stop interpolation at the last slice Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

BlueBrain/Deep-Atlas#67 · 1 comment · Opened Aug 17, 2022
Update README and Singularity image Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#66 · Opened Aug 16, 2022
Monitor interpolation memory usage when using GPUs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#59 · Opened Jul 26, 2022
Make sure Singularity does not load $HOME by default Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#58 · Opened Jul 26, 2022
Put every parameters as optional for readibility Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

BlueBrain/Deep-Atlas#57 · Opened Jul 26, 2022
Handle gene slices outside of Nissl shape Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

BlueBrain/Deep-Atlas#44 · Opened Jun 13, 2022
Fix formatting logging message Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

BlueBrain/Deep-Atlas#41 · Opened May 30, 2022
Add file handler for logging Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

BlueBrain/Deep-Atlas#40 · Opened May 30, 2022
Add verbose argument to the CLI Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

BlueBrain/Deep-Atlas#38 · Opened May 25, 2022
Inspect input and output dtypes together with value ranges for all stages Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#37 · Opened May 25, 2022
Profile the pipeline Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

BlueBrain/Deep-Atlas#24 · Opened May 19, 2022
Turn resolution into a parameter (currently hardcoded) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#19 · Opened May 19, 2022
Make sure each stage (+ overall pipeline) reprodicible Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

BlueBrain/Deep-Atlas#18 · 1 comment · Opened May 19, 2022
Add unit tests Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

BlueBrain/Deep-Atlas#17 · Opened May 19, 2022
Think about removing the background Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/Deep-Atlas#15 · Opened May 19, 2022
Improve pipeline management Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

BlueBrain/Deep-Atlas#13 · Opened May 19, 2022

BlueBrain/Deep-Atlas

Get new issues in your inbox