AllenInstitute/biodata-schema

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• Processing.__add__ turns parallel branches into a serial chain

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  Difficulty 5/5 Over a week Newbie friendliness 38/100

  AllenInstitute/biodata-schema#116 · Opened Oct 16, 2026

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• Disable model_construct calls in all v4 code

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  Difficulty 4/5 3-5 days Newbie friendliness 30/100

  AllenInstitute/biodata-schema#110 · Opened Oct 8, 2026

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• v4 conversion guide

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  Difficulty 2/5 1-3 hours Newbie friendliness 58/100

  AllenInstitute/biodata-schema#106 · Opened Oct 6, 2026

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• Remove the unnecessary schema upload actions

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  Difficulty 2/5 1-3 hours Newbie friendliness 35/100

  AllenInstitute/biodata-schema#101 · Opened Oct 6, 2026

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• Hash QCMetric.name and .tags to ensure uniqueness

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  AllenInstitute/biodata-schema#91 · 1 assignee · Opened Sep 29, 2026

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• docs: clarify DataDescription project/investigators/funding in derived context

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  Difficulty 2/5 1-2 days Newbie friendliness 72/100

  AllenInstitute/biodata-schema#90 · 1 comment · 1 assignee · Opened Sep 29, 2026

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• support citation info and other post-publication metadata updates

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  AllenInstitute/biodata-schema#88 · 1 comment · 1 assignee · Opened Sep 29, 2026

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• [Models] Survey modality and standardized details

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  AllenInstitute/biodata-schema#85 · 1 comment · Opened Sep 25, 2026

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• ImagingConfig or files.json support for time/channel axes

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  AllenInstitute/biodata-schema#82 · Opened Sep 25, 2026

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• Replace List with Set where possible

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  AllenInstitute/biodata-schema#79 · Opened Sep 21, 2026

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• New procedures or procedure types

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  Difficulty 2/5 1-3 hours Newbie friendliness 68/100

  AllenInstitute/biodata-schema#78 · 4 comments · Opened Sep 18, 2026

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• Cyclic IF

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  AllenInstitute/biodata-schema#75 · Opened Sep 18, 2026

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• Plating procedure and specimen ID locations in acquisition

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  Difficulty 5/5 Over a week Newbie friendliness 45/100

  AllenInstitute/biodata-schema#74 · Opened Sep 18, 2026

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• Make instrument_id a Set[string] for merges

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  Difficulty 3/5 1-2 days Newbie friendliness 35/100

  AllenInstitute/biodata-schema#72 · Opened Sep 18, 2026

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• BreedingInfo donor + surrogate

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  Difficulty 5/5 Over a week Newbie friendliness 35/100

  AllenInstitute/biodata-schema#71 · 1 comment · Opened Sep 18, 2026

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• For human subjects HIPAA requires age as int <= 89, 90+

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  Difficulty 3/5 1-2 days Newbie friendliness 35/100

  AllenInstitute/biodata-schema#70 · 1 comment · Opened Sep 18, 2026

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• Create new field to track the status of the linked data asset

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  AllenInstitute/biodata-schema#66 · 4 comments · 1 reaction · Opened Sep 15, 2026

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• Sketch out a plan for tracking genetic strategy

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  AllenInstitute/biodata-schema#65 · Opened Sep 9, 2026

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• Fiber photometry procedures metadata doesn't allow you to link intended measurement to a specific sensor

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  AllenInstitute/biodata-schema#5 · 5 comments · 2 assignees · Opened Jun 23, 2026

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• Intended_depth / Operational_depth

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  AllenInstitute/biodata-schema#6 · 1 assignee · Opened Jun 15, 2026

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• Invalid name survives the derived data name regex

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  AllenInstitute/biodata-schema#7 · 1 comment · 1 assignee · Opened Jun 11, 2026

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• add data_description field to flag non-AIND data

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  AllenInstitute/biodata-schema#13 · 4 comments · 2 assignees · Opened May 19, 2026

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• config for 1p imaging

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  AllenInstitute/biodata-schema#14 · 2 assignees · Opened May 11, 2026

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• Lens implant

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  AllenInstitute/biodata-schema#15 · 1 comment · 2 assignees · Opened May 11, 2026

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• Accelerometer placement

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  AllenInstitute/biodata-schema#16 · 2 comments · 1 assignee · Opened May 11, 2026

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• Consider requiring intended_measurement in Channel

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  AllenInstitute/biodata-schema#17 · Opened May 5, 2026

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• CameraAssembly doesn't support two lens in a macro coupler for ISI Instrument

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  AllenInstitute/biodata-schema#18 · 1 comment · 1 assignee · Opened May 3, 2026

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• Enable cross-platform testing in the test matrix

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  AllenInstitute/biodata-schema#19 · 1 assignee · Opened May 2, 2026

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• Move perfusion or add a "terminal_procedure_details" section

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  Difficulty 5/5 Over a week Newbie friendliness 35/100

  AllenInstitute/biodata-schema#20 · Opened Apr 29, 2026

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• change DataProcess.output_file to allow multiple

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  AllenInstitute/biodata-schema#21 · 1 comment · 1 assignee · Opened Apr 23, 2026

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• create_metadata_json should pull the name from the data_description

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  AllenInstitute/biodata-schema#22 · 5 comments · Opened Apr 16, 2026

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• Developmental stage

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  AllenInstitute/biodata-schema#23 · 6 comments · 1 assignee · Opened Apr 8, 2026

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• Develop class/vocabulary for restrictions

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  AllenInstitute/biodata-schema#24 · 1 comment · 3 assignees · Opened Apr 8, 2026

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• How to track batches of experiments while affording multi-dimensional asset grouping

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  AllenInstitute/biodata-schema#25 · 7 comments · 1 assignee · Opened Mar 27, 2026

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• files.json

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  AllenInstitute/biodata-schema#27 · 3 comments · 1 assignee · Opened Mar 20, 2026

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• Remove TriggerType from Detectors

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  AllenInstitute/biodata-schema#28 · Opened Mar 5, 2026

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• Add behavior-only instrument and acquisition examples to /examples

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  AllenInstitute/biodata-schema#29 · 1 comment · 1 assignee · Opened Feb 23, 2026

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• icephys - config for assembly

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  AllenInstitute/biodata-schema#30 · 7 comments · 1 assignee · Opened Feb 6, 2026

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• Add sectioning.md page with some images describing how to use Sectioning/PlanarSectioning

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  AllenInstitute/biodata-schema#31 · 1 assignee · Opened Feb 5, 2026

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• [v3] Optional -> required fields

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  AllenInstitute/biodata-schema#32 · 1 assignee · Opened Feb 4, 2026

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• add behavior videos to check modality config

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  AllenInstitute/biodata-schema#35 · 1 comment · 1 assignee · Opened Jan 30, 2026

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• restrictions in MouseSubject should be upleveled to the Subject class

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  AllenInstitute/biodata-schema#36 · 2 comments · 1 assignee · Opened Jan 30, 2026

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• Validate modality between acquisition data streams and data_description.modalities

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  AllenInstitute/biodata-schema#37 · 1 comment · 1 assignee · Opened Jan 12, 2026

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• resolve confusing state of Processing schema

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  AllenInstitute/biodata-schema#39 · 5 comments · Opened Dec 16, 2025

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• Rename "suffix" to "extension" in write_standard_file

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  Difficulty 2/5 1-3 hours Newbie friendliness 50/100

  AllenInstitute/biodata-schema#40 · Opened Nov 21, 2025

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• tweaks for Processing example in docs

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  documentation

  AllenInstitute/biodata-schema#41 · 1 comment · 1 assignee · Opened Nov 18, 2025

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• Replace protocol strings with ProtocolModel

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  AllenInstitute/biodata-schema#43 · 1 comment · 1 assignee · Opened Oct 29, 2025

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• Commit linter changes automatically when merging PRs

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  AllenInstitute/biodata-schema#44 · 2 comments · 1 assignee · Opened Oct 2, 2025

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• Consider adding additonal information from harp-tech whoami device list to generated models

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  AllenInstitute/biodata-schema#45 · 1 assignee · Opened Sep 19, 2025

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• Consider aligning the name of scoped properties

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  AllenInstitute/biodata-schema#46 · 3 comments · 1 assignee · Opened Aug 27, 2025

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