althonos/pycomsaCython
Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.
(2 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
仓库
althonos 的仓库
althonos/pyfamsaCython
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
(43 stars) (4 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyfastaniCython
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
(24 stars) (2 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyhcrfPython
A hidden conditional random field (HCRF) implementation in Python.
(3 stars) (1 fork) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyhmmerCython
Cython bindings and Python interface to HMMER3.
(164 stars) (17 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyinfernalCython
Cython bindings and Python interface to Infernal 1.1.
(9 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyjessCython
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!
(11 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pymemesuiteCython
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
(17 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pymuscle5Cython
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
(25 stars) (2 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyncbitkCython
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
(11 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyopalCython
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
(11 stars) (1 fork) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyorthoaniPython
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
(36 stars) (4 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyphymlCython
Cython bindings and Python interface to PhyML 3.
(0 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyrodigalCython
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
(189 stars) (10 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyrodigal-gvPython
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
(23 stars) (4 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pysamCython
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
(0 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyskaniRust
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
(29 stars) (2 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pyswrdCython
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.
(5 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pysylphRust
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
(21 stars) (0 forks) (0 个已索引 issue) (0 个开放 good first issue)
althonos/pytantanCython
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
(3 stars) (1 fork) (0 个已索引 issue) (0 个开放 good first issue)