partition_dataset with ratios leaves some items out of every partition
维护者通常 3 天内回复
评估
- 难度
- 2/5
- 预计耗时
- 1-3 小时
- 新手友好度
- 78/100
- Issue 类型
- 缺陷
- 描述清晰度
- 描述清楚
- 活跃度
- 活跃
- 领域
- data, machine-learning
调研方向
从 monai/data/utils.py 中的 partition_dataset 及其链接行附近基于比例的大小计算开始;同时检查相关的 partition_dataset_classes 路径。重现报告中缺少项目的情况,然后运行或添加针对比例划分和基于类别划分的测试。完成标准是每个输入项目都恰好出现在一个分区中,包括在舍入后的大小原本会遗漏项目的情况下。
由索引模型根据 Issue 内容生成。
描述
Describe the bug
The text below was written with AI assistance (Claude and GPT-6 Astra).
partition_dataset(data, ratios=...) rounds each partition size on its own (https://github.com/Project-MONAI/MONAI/blob/6920610c310200d683a3b00987a05893ccf1ca5f/monai/data/utils.py#L1217-L1224). When the rounded sizes add up to less than len(data), the remaining items are not in any partition, and nothing reports it. With three ratios this happens for about one length in five (0.8/0.1/0.1: 200 of the lengths 1 to 1000; 1/1/1: 334), and with five equal ratios up to two items are lost. partition_dataset_classes splits each class with the same function, so it can lose one item per class. Two-way splits are not affected.
I found this by reading and testing the code.
To Reproduce
from monai.data import partition_dataset
print(partition_dataset(list(range(10)), ratios=[1, 1, 1]))
data = list(range(63)) # e.g. the 63 training cases of MSD Task06_Lung
train, val, test = partition_dataset(data, ratios=[0.8, 0.1, 0.1], shuffle=True, seed=0)
print(len(train), len(val), len(test), "in no split:", sorted(set(data) - set(train + val + test)))
Output on dev (6920610):
[[0, 1, 2], [3, 4, 5], [6, 7, 8]]
50 6 6 in no split: [44]
The same happens for other Decathlon training-set sizes, e.g. 303 (Task08_HepaticVessel) and 484 (Task01_BrainTumour) with 0.8/0.1/0.1, 63 and 303 with 0.7/0.15/0.15, and 32 (Task05_Prostate) with five equal ratios, which loses two cases. In a Decathlon-style pipeline (load_decathlon_datalist -> partition_dataset -> CacheDataset -> DataLoader) with 63 cases, one case is never loaded by the train, validation or test split.
Expected behavior
Every item should be in exactly one partition, as in the docstring example ([0.6, 0.2, 0.2] on 5 items gives [[1, 2, 3], [4], [5]]). drop_last is documented as not applying to the ratio path.
Environment
MONAI 1.6.1rc0+50.g6920610c (dev), PyTorch 2.14.1+cpu, NumPy 2.5.4, Python 3.12.13, Linux.
Additional context
I have a small fix that gives the leftover items to the partitions whose sizes were rounded down the most and leaves every split that already covers all items unchanged, plus tests, and can open a PR.
I made this report and directed the investigation, with AI assistance from Claude and GPT-6 Astra.
- 主要语言
- Python
- 星标
- 8.8k
- 派生
- 1.7k
- 平均合并
- 5 天 3 小时
- 30 天内合并 PR
- 13
环境准备
- 提供 Dockerfile 或 Docker Compose 文件
- 有 Pull Request 模板
- 阅读贡献指南
从这里开始
- 先读完整个 Issue,再读项目的贡献指南。
- 在 Issue 下留言说明你要接手 —— 这能避免两个人做同样的事。
- Fork 仓库,在一个分支上完成修改。
- 提交 Pull Request,并在描述里引用这个 Issue 编号。
Project-MONAI/MONAI 的其他 Issue
-
难度 2/5 1-3 小时 新手友好度 72/100
Project-MONAI/MONAI#9220 ·
维护者通常 3 天内回复
-
FocalLoss mean reduction is multiplied by the number of channels when ignore_index is set可能已有人在做 @mottopanikeiku 于 5 天前认领。 未关闭
难度 2/5 1-3 小时 新手友好度 82/100
Project-MONAI/MONAI#9214 ·
维护者通常 3 天内回复
-
DiNTS: missing graph-break regression test (follow-up to #9145)可能已有人在做 @nilapate 于 18 天前认领。 未关闭
难度 2/5 1-3 小时 新手友好度 66/100
Project-MONAI/MONAI#9159 ·
维护者通常 3 天内回复
-
ProbMapProducer raises IndexError on numpy 2.x: SlidingPatchWSIDataset emits float locations可能已有人在做 @nilapate 于 29 天前认领。 未关闭
难度 2/5 1-3 小时 新手友好度 82/100
Project-MONAI/MONAI#9135 · 1 条评论 ·
维护者通常 3 天内回复
-
RandGridPatch crashes for documented 0 or None patch_size entries可能已有人在做 @Rajioba1 于 85 天前认领。 未关闭
难度 2/5 1-3 小时 新手友好度 78/100
Project-MONAI/MONAI#9046 ·
维护者通常 3 天内回复
查看 Project-MONAI/MONAI 的全部 Issue
相似的 Issue
-
难度 2/5 1-3 小时 新手友好度 67/100
维护者通常 2 天内回复
-
难度 2/5 1-3 小时 新手友好度 68/100
letsencrypt/cp-cps#361 ·
-
难度 2/5 1-3 小时 新手友好度 65/100
-
CI: startup_failure because callers grant fewer permissions than ledger-app-workflows@v1 declares可能已有人在做 @maykonmichel 今天认领。 未关闭
难度 2/5 1-3 小时 新手友好度 76/100
LedgerHQ/app-boilerplate-rust#227 ·
-
难度 2/5 1-3 小时 新手友好度 76/100
linuxmint/mintupdate#1107 ·