zavolanlab/mirflowz

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Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.

Stars: 6
Forks: 1
Open beginner issues: 0
Indexed issues: 18

Dominant language: Python
License: MIT
Last GitHub push: May 9, 2026
Latest indexed: Sep 21, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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18 open issues indexed

feat: publication-style pileups visualizations Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

zavolanlab/mirflowz#149 · Opened Jan 19, 2025
feat: write a custom collapsing script Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#128 · Opened Dec 2, 2023
build: check sub-environment `r.yaml` Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 25/100

zavolanlab/mirflowz#117 · 1 comment · Opened Nov 4, 2023
feat: add versioning, changelog and release notes Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#103 · Opened Sep 16, 2023
Add configuration profiles Open

design

Difficulty 5/5 Over a week Newbie friendliness 25/100

zavolanlab/mirflowz#95 · Opened Jun 29, 2023
refactor: merge tables with more than 2 fields Open

refactor

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#87 · Opened May 24, 2023
Use module to turn SAM files into BAM files Open

design low priority refactor

zavolanlab/mirflowz#83 · 1 assignee · Opened May 17, 2023
upload coverage report on codecov Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

zavolanlab/mirflowz#74 · Opened Apr 28, 2023
create unit tests Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

zavolanlab/mirflowz#63 · 1 reaction · Opened Apr 12, 2023
create unit tests for `sam_uncollapse.pl` Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#62 · Opened Apr 12, 2023
create unit tests for `sam_trx_to_sam_gen.pl` Open

low priority

Difficulty 5/5 Over a week Newbie friendliness 35/100

zavolanlab/mirflowz#61 · Opened Apr 12, 2023
create unit tests for `sam_remove_duplicates_inferior_alignments_multimappers.1_7.pl` Open

low priority

Difficulty 5/5 Over a week Newbie friendliness 28/100

zavolanlab/mirflowz#59 · Opened Apr 12, 2023
create unit tests for `merge_tables.R` Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#58 · Opened Apr 12, 2023
create unit tests for `map_chromosomes.pl` Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 35/100

zavolanlab/mirflowz#57 · Opened Apr 12, 2023
create unit tests for `get_exons_bed.1.1.2.R` Open

low priority

Difficulty 5/5 Over a week Newbie friendliness 25/100

zavolanlab/mirflowz#56 · Opened Apr 12, 2023
Contribute with BioConductor image(s) for R and/or `tidyverse` with `optparse` Open

low priority

Difficulty 4/5 3-5 days Newbie friendliness 25/100

zavolanlab/mirflowz#35 · Opened Mar 18, 2023
Cached Docker images in GitHub Action Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

zavolanlab/mirflowz#23 · 1 comment · Opened Mar 12, 2023
Prepare test case for CI on cluster Open

zavolanlab/mirflowz#18 · 6 comments · 1 assignee · Opened Mar 7, 2023

zavolanlab/mirflowz

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