Owner

yoavram

3 indexed repositories · View on GitHub

curveball
Predicting microbial growth in a mixed culture from growth curve data

Python · 14 stars
nanochat
Notebooks for nanochat workshop

Jupyter Notebook · 1 star
AniML
One day workshop on practical data science with AI coding agent for Zoologists

Jupyter Notebook · 0 stars

Beginner friendly Everything

Open All

Add exercises/transformer_ts.ipynb + solution: Keras self-attention on FordA time series (DL2026 Phase 5) Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

yoavram/nanochat#1 · Opened Sep 2, 2026
Remove computervision session Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/AniML#1 · Opened Apr 28, 2026
Use with Biotek Reader Open

IO

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/curveball#152 · Opened Jan 7, 2020
Support for cleaned data? Open

CLI help wanted IO

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/curveball#150 · 1 comment · Opened Oct 15, 2019
Add support for Spectramax Open

CLI enhancement IO

Difficulty 4/5 3-5 days Newbie friendliness 25/100

yoavram/curveball#149 · Opened Sep 2, 2019
Consistent default for use_weights Open

refactoring

Difficulty 3/5 1-2 days Newbie friendliness 32/100

yoavram/curveball#133 · Opened Jun 14, 2016
Faster growth function Open

enhancement refactoring

Difficulty 4/5 3-5 days Newbie friendliness 35/100

yoavram/curveball#132 · Opened Jun 14, 2016
Parallelization Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/curveball#129 · Opened May 31, 2016
Change find_max_growth Open

question

Difficulty 5/5 Over a week Newbie friendliness 28/100

yoavram/curveball#125 · Opened Mar 16, 2016
Make models.py agnostic to the choice of model Open

refactoring

Difficulty 4/5 3-5 days Newbie friendliness 30/100

yoavram/curveball#115 · Opened Dec 3, 2015
Check dependence of parameter estimates on initial guesses Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

yoavram/curveball#105 · Opened Oct 23, 2015
Warnning when K is not reached in the data Open

enhancement question

Difficulty 5/5 Over a week Newbie friendliness 20/100

yoavram/curveball#96 · Opened Oct 22, 2015
Find max time Open

enhancement question

Difficulty 3/5 1-2 days Newbie friendliness 25/100

yoavram/curveball#95 · 1 comment · Opened Oct 22, 2015
Test on Windows Open

CI tests

Difficulty 3/5 1-2 days Newbie friendliness 25/100

yoavram/curveball#80 · 1 comment · Opened Oct 13, 2015
Faster build on Travis Open

CI

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

yoavram/curveball#79 · 2 comments · Opened Oct 13, 2015
Input format Open

CLI enhancement refactoring tests

Difficulty 4/5 3-5 days Newbie friendliness 35/100

yoavram/curveball#73 · 1 comment · Opened Oct 12, 2015
Move deployments to public server Open

CI

Difficulty 4/5 3-5 days Newbie friendliness 30/100

yoavram/curveball#67 · Opened Oct 9, 2015
Acknowledgements Open

docs question

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

yoavram/curveball#60 · Opened Oct 8, 2015
Illegal lag values when resampling the parameters Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

yoavram/curveball#58 · Opened Oct 8, 2015
Test on OS X Open

CI tests

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

yoavram/curveball#52 · Opened Oct 7, 2015
Consider if nu must be >=1 Open

question

Difficulty 4/5 3-5 days Newbie friendliness 30/100

yoavram/curveball#37 · 2 comments · Opened Sep 25, 2015
Model fit object changes due to one of curveball's functions Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/curveball#30 · Opened Sep 21, 2015
Log Open

CLI enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

yoavram/curveball#25 · Opened Sep 8, 2015
Jitter initial param guesses when fit isn't good Open

enhancement question

Difficulty 3/5 1-2 days Newbie friendliness 35/100

yoavram/curveball#9 · 3 comments · Opened Apr 28, 2015
Find outlier curves Open

bug

Difficulty 5/5 Over a week Newbie friendliness 25/100

yoavram/curveball#4 · 3 comments · Opened Apr 27, 2015

yoavram

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