wurmlab/sequenceserver

View on GitHub

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Stars: 302
Forks: 121
Open beginner issues: 0
Indexed issues: 85

Dominant language: JavaScript
License: AGPL-3.0
Last GitHub push: May 11, 2026
Latest indexed: Sep 21, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: hacktoberfest good first issue help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

85 open issues indexed

Database corruption causes SequenceServer to not start up Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

wurmlab/sequenceserver#841 · Opened Jun 26, 2026
Issue with blast search Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

wurmlab/sequenceserver#835 · Opened Aug 6, 2025
Stop referring to google group Open

wurmlab/sequenceserver#832 · 1 assignee · Opened Jun 23, 2025
Add user interface element for taxonomic search filtering Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

wurmlab/sequenceserver#827 · 1 comment · Opened May 16, 2025
BLAST failed abruptly (exit status: 137). Killed Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

wurmlab/sequenceserver#825 · Opened Mar 27, 2025
BLAST Database error: Error pre-fetching sequence data Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#818 · 1 comment · Opened Nov 15, 2024
circos view breaking Open

wurmlab/sequenceserver#817 · 4 comments · 1 assignee · Opened Nov 14, 2024
Pairwise alignments are misformatted in PDF output Open

bug user experience

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#815 · Opened Oct 25, 2024
CSRF blocked the API request Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

wurmlab/sequenceserver#809 · 3 comments · Opened Oct 9, 2024
fix sidebar and FASTA ID wrapping Open

wurmlab/sequenceserver#802 · 1 comment · 1 assignee · Opened Oct 1, 2024
Capitalisation and punctuation in report Open

bite-sized UI

wurmlab/sequenceserver#789 · 1 assignee · Opened Sep 11, 2024
BLAST Submission form formatting improvements Open

bite-sized UI

wurmlab/sequenceserver#788 · 1 assignee · Opened Sep 11, 2024
Support optional job timeout Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

wurmlab/sequenceserver#770 · Opened Jul 18, 2024
Add sam output format? For those funny cases where opening in genome browser may be best? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

wurmlab/sequenceserver#769 · Opened Jul 16, 2024
"Error Obtaining Databases" on sequenceserver launch Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#763 · Opened Jul 6, 2024
Advanced params help modal should be bigger - take up more of the page so we don't need to scroll as much Open

wurmlab/sequenceserver#738 · 2 comments · 1 assignee · Opened Apr 16, 2024
Make it easier to have custom title and text on page Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

wurmlab/sequenceserver#705 · Opened Nov 30, 2023
display issue in Safari 16.5.2 but not Chrome Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

wurmlab/sequenceserver#701 · Opened Nov 17, 2023
RSpec testing wants to be robust to capybara flakiness Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#668 · Opened Jul 20, 2023
gh actions want js test to run automatically Open

wurmlab/sequenceserver#667 · 1 comment · 1 assignee · Opened Jul 20, 2023
xml import is unclear Open

Difficulty 1/5 Under an hour Newbie friendliness 48/100

wurmlab/sequenceserver#660 · 1 comment · Opened Jul 5, 2023
Results summary Open

feature

Difficulty 3/5 1-2 days Newbie friendliness 25/100

wurmlab/sequenceserver#659 · Opened Jul 3, 2023
Improve coverage for recurring UI issues Open

build

Difficulty 4/5 3-5 days Newbie friendliness 30/100

wurmlab/sequenceserver#655 · Opened Jun 12, 2023
Add R API & usage example Open

feature

Difficulty 5/5 Over a week Newbie friendliness 25/100

wurmlab/sequenceserver#654 · Opened Jun 12, 2023
sharing email text Open

feature

wurmlab/sequenceserver#651 · 1 assignee · Opened Jun 11, 2023
Selection issues Open

bug

wurmlab/sequenceserver#648 · 3 comments · 1 assignee · Opened Jun 9, 2023
Previous query / next query Open

bug

wurmlab/sequenceserver#647 · 1 assignee · Opened Jun 9, 2023
Word cloud of hit names? Open

feature

Difficulty 5/5 Over a week Newbie friendliness 15/100

wurmlab/sequenceserver#636 · 1 comment · Opened Apr 7, 2023
Donwload fasta file - downloads the entire chromosome Open

feature

Difficulty 3/5 1-2 days Newbie friendliness 25/100

wurmlab/sequenceserver#635 · Opened Apr 5, 2023
database_widget: tree breaks edit / back button Open

bug

wurmlab/sequenceserver#633 · 1 reaction · 1 assignee · Opened Jan 21, 2023
js version bumps Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#616 · Opened Jul 31, 2022
Results page adaptive view breaking Open

bug

wurmlab/sequenceserver#614 · 1 comment · 1 assignee · Opened Jul 27, 2022
Please update the document for nginx reverse proxy Open

Difficulty 1/5 1-3 hours Newbie friendliness 42/100

wurmlab/sequenceserver#607 · 1 reaction · Opened Jun 14, 2022
When more than 8? queries, should show a "next query" button Open

wurmlab/sequenceserver#592 · 1 comment · 1 assignee · Opened May 20, 2022
Container does not to work Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 20/100

wurmlab/sequenceserver#581 · 5 comments · Opened Apr 6, 2022
SequenceServer tries to format impossible FASTA files Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#580 · Opened Apr 4, 2022
Sticky job_id prevents server from fetching databases Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#574 · 5 comments · Opened Jan 25, 2022
FASTA file detection is unreliable Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#567 · 3 comments · Opened Dec 17, 2021
Mechanism to alert users to regarding version or security updates Open

feature

Difficulty 5/5 Over a week Newbie friendliness 25/100

wurmlab/sequenceserver#565 · Opened Dec 9, 2021
Accessibility Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#561 · 2 comments · Opened Nov 30, 2021
routes.rb posts to /#{job.id}; should post to REQUEST_URI/{#job.id} Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#555 · 14 comments · 4 reactions · Opened Oct 28, 2021
Downloads of HSP alignments - slight reformatting Open

bite-sized

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

wurmlab/sequenceserver#554 · 3 comments · Opened Oct 22, 2021
Fold database list when there are many Open

bite-sized hacktoberfest UI

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#551 · Opened Oct 7, 2021
Support filename with spaces Open

bug hacktoberfest

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#550 · 8 comments · Opened Oct 6, 2021
Multi-column view if only one database type Open

hacktoberfest UI

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#545 · 1 comment · Opened Sep 8, 2021
limit query size and customize /tmp dir Open

hacktoberfest

Difficulty 4/5 3-5 days Newbie friendliness 30/100

wurmlab/sequenceserver#535 · 3 comments · 2 reactions · Opened Jul 22, 2021
Non-executable files set with executable permissions Open

bite-sized good first issue hacktoberfest help wanted

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

wurmlab/sequenceserver#530 · 2 comments · Opened Jun 7, 2021
Maybe remove '*' if it is at the end of protein sequence Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wurmlab/sequenceserver#523 · 2 comments · Opened Mar 29, 2021
bed or gff alternate table format outputs Open

good first issue

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wurmlab/sequenceserver#501 · 1 comment · Opened Nov 19, 2020
Mixed sequence type notification should be sticky Open

good first issue hacktoberfest UI

Difficulty 3/5 1-2 days Newbie friendliness 38/100

wurmlab/sequenceserver#500 · Opened Nov 11, 2020

wurmlab/sequenceserver

Get new issues in your inbox