Clean up attributes.tsv (typo, missing groups, stray semicolon, mixed case)

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Assessment

Difficulty
2/5
Estimated time
1-3 hours
Newbie friendliness
65/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Active
Tech stack
r
Domain
data

Research direction

Start by locating attributes.tsv and checking how its attribute_group values are used in the export’s \b<group>\b matching. Correct the listed typo, missing groups, trailing semicolon, and mixed case, then verify the affected rows match their intended groups and no longer contain those inconsistencies.

Written by the indexing model from the issue text.

Description

Point 4 of #264, which #279 closes without doing it:

  • both extreme environemnt and extreme environment appear as attribute_group
  • 56 rows have no attribute_group
  • mutation rate per site per year; has a trailing semicolon
  • Butyrate-Producing Bacteria;butyrate producing mixes case

The export matches values to groups with \b<group>\b on attribute_group, so the typo and the missing groups leave those attributes unmatched.

Drafted with Claude Code.

Dominant language
R
Stars
6
Forks
6
Avg merge
1h
Merged PRs (30d)
10

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  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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