tseemann/snippy

snippy-core dies if no snps

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#278 opened on Mar 25, 2019

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help wanted

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Description

I had a run of 801 genomes, where if there were no SNPs in an individual genome, snippy-core would die.

Contributor guide

Research direction
Investigate the code in snippy core that handles the case when no SNPs are found in a genome. Look for potential missing checks or unhandled edge cases that cause the program to die.
Tech stack
perl
Domain
clitooling
Issue type
Bug
DifficultyEstimated implementation difficulty for a new contributor, from 1 for very small changes to 5 for expert-level work.
2
Estimated timeA rough time range for an experienced contributor to investigate, implement, test, and prepare a pull request.
1-3 hours
Activity statusHow available the issue appears right now: fresh, active, stale, blocked, or waiting on maintainer input.
Active
ClarityHow clearly the issue explains the expected change, acceptance criteria, and next step.
Clear
Prerequisites
PerlGit
Newbie friendlinessA 1-100 score estimating how approachable this issue is for first-time contributors.
70