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sokrypton/7.571Jupyter Notebook

7.571 - Quantitative Analysis of Biological Data Material

Last commit Mar 10, 2026

 (4 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/AM216Jupyter Notebook

Material for lecture

Last commit Aug 14, 2024

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/AccAdam_TF2Python

TF2-compatible Accumulated Gradients for Adam

Last commit Mar 18, 2022

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
sokrypton/AfDesign_partialJupyter Notebook

WIP

Last commit Jul 7, 2022

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/CIRPINJupyter Notebook

Source code for CIRPIN: Learning Circular Permutation-Invariant Representations to Uncover Putative Protein Homologs

Last commit Dec 4, 2025

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/ChaiFolder

Last commit Mar 13, 2026

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/ColabBioJupyter Notebook

random colab notebooks for biology

Last commit Aug 23, 2025

 (26 stars) (3 forks) (0 indexed issues) (0 open good first issues)
sokrypton/ColabDesignPython

Making Protein Design accessible to all via Google Colab!

Last commit Oct 23, 2025

 (914 stars) (224 forks) (0 indexed issues) (0 open good first issues)
sokrypton/ColabDesign_paramsJupyter Notebook

params moved to seperate repo

Last commit Jul 14, 2023

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/ColabFoldJupyter Notebook

Making Protein folding accessible to all!

Last commit Apr 29, 2026

 (2,776 stars) (722 forks) (2 indexed issues) (2 open good first issues)
sokrypton/DeepLearningExamplesJupyter Notebook

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

Last commit May 22, 2023

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/EMBOIntegModelling23Jupyter Notebook

Last commit Sep 22, 2023

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/GREMLINMATLAB

GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.

Last commit Jul 3, 2016

 (25 stars) (7 forks) (0 indexed issues) (0 open good first issues)
sokrypton/GREMLIN-GUIHTML

Last commit Feb 20, 2026

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/GREMLIN_CNNJupyter Notebook

Last commit Oct 24, 2019

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/GREMLIN_CPPJupyter Notebook

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

Last commit Oct 17, 2022

 (60 stars) (25 forks) (0 indexed issues) (0 open good first issues)
sokrypton/GREMLIN_LHJupyter Notebook

Last commit Mar 14, 2025

 (8 stars) (3 forks) (0 indexed issues) (0 open good first issues)
sokrypton/HelixFoldPython

Last commit Aug 5, 2022

 (9 stars) (4 forks) (0 indexed issues) (0 open good first issues)
sokrypton/LigandMPNNPython

Last commit Oct 16, 2025

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
sokrypton/OmegaFoldPython

OmegaFold Release Code

Last commit Aug 6, 2022

 (7 stars) (5 forks) (0 indexed issues) (0 open good first issues)