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slowkow/rapids-single-cell-examplesJupyter Notebook

Examples of single-cell genomic analysis accelerated with RAPIDS

Last commit Sep 28, 2020

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/rcpp-galleryC++

Source code for the Rcpp Gallery website

Last commit May 4, 2018

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slowkow/regl-scatterplotJavaScript

Scalable WebGL-based scatter plot library build with Regl

Last commit Feb 5, 2026

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slowkow/remotecopyPerl

Copy from your terminal into your local clipboard.

Last commit Mar 9, 2014

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/revdepcheckR

R package reverse dependency checking

Last commit Oct 3, 2025

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/saturationR

:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.

Last commit Apr 13, 2023

 (6 stars) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/scCloudWDL

scCloud workflows

Last commit Sep 18, 2019

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/scclust-RC

Size-constrained Clustering in R

Last commit Aug 24, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/scdeR

statistical methods for analyzing single-cell RNA-seq data

Last commit Jan 12, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/scistreerR

R/Rcpp implementation of the ScisTree algorithm

Last commit Jun 15, 2023

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slowkow/seoul256.vimVim Script

:deciduous_tree: Low-contrast Vim color scheme based on Seoul Colors

Last commit Sep 5, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
slowkow/seuratR

R toolkit for single cell genomics

Last commit Jul 18, 2020

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
slowkow/slowkow

Last commit Apr 2, 2024

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slowkow/slowkow.comJavaScript

Personal website.

Last commit Aug 8, 2025

 (3 stars) (2 forks) (0 indexed issues) (0 open good first issues)
slowkow/snakefilesPython

:snake: Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).

Last commit Jul 18, 2017

 (95 stars) (36 forks) (0 indexed issues) (0 open good first issues)
slowkow/snpbookJavaScript

:orange_book: Explore 1000 Genomes variant data with JavaScript.

Last commit Sep 14, 2018

 (8 stars) (2 forks) (0 indexed issues) (0 open good first issues)
slowkow/snpseaC++

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

Last commit Feb 29, 2024

 (37 stars) (9 forks) (0 indexed issues) (0 open good first issues)
slowkow/soy-rtmsPerl

Computational analysis of retrotransposon-associated minisatellite DNAs in the soybean genome

Last commit Apr 11, 2012

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slowkow/symphonyR

Efficient and precise single-cell reference atlas mapping with Symphony

Last commit Jan 15, 2021

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slowkow/tftargetsR

:dart: Human transcription factor target genes from 6 databases in convenient R format.

Last commit May 2, 2017

 (87 stars) (19 forks) (0 indexed issues) (0 open good first issues)