saeyslab/CytoNorm

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R library to normalize cytometry data

Stars: 41
Forks: 12
Open beginner issues: 0
Indexed issues: 33

Dominant language: R
License: No license data
Last GitHub push: Jul 7, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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33 open issues indexed

Weird lines (glitch) after cytonorm Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

saeyslab/CytoNorm#52 · Opened Aug 5, 2026
plotDensities Batch Column creation error and solution Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

saeyslab/CytoNorm#51 · Opened May 6, 2025
More plotting control, please Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

saeyslab/CytoNorm#50 · 1 comment · Opened Apr 7, 2025
CytoNorm.normalize() creating unknown .fcs files Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

saeyslab/CytoNorm#49 · Opened Feb 25, 2025
Clarifications on CytoNorm behaviour for various datasets Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

saeyslab/CytoNorm#48 · 4 comments · 1 reaction · Opened Jan 6, 2025
How to amend script to Normalize without clustering Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#47 · 3 comments · Opened Nov 1, 2024
marker expression maximums change across batch Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

saeyslab/CytoNorm#46 · Opened Oct 21, 2024
Reading fcs files generated through PeacoQC by Cytonorm Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#44 · 1 comment · Opened May 7, 2024
cytonorm error in if (any(idx)) { : missing value where TRUE/FALSE needed Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

saeyslab/CytoNorm#43 · 2 comments · Opened Apr 29, 2024
Arcsinh transform with a cofactor of 150 for Cytek Aurora data Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

saeyslab/CytoNorm#42 · 1 comment · Opened Sep 6, 2023
Error in the step of training the model Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

saeyslab/CytoNorm#41 · 2 comments · Opened Jul 17, 2023
CytoNorm for anaconda install Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

saeyslab/CytoNorm#40 · 3 comments · Opened Jul 7, 2023
Not a real issue, but rather I just don't understand how to read the testCV function results. Help? Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

saeyslab/CytoNorm#39 · 1 comment · Opened Jun 20, 2023
CytoNorm by Flowjo=> No normalized files created Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

saeyslab/CytoNorm#37 · 7 comments · Opened Dec 6, 2022
prep.cytonorm does not keep original cellular.cols columns Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

saeyslab/CytoNorm#36 · Opened Aug 14, 2022
Differential marker expression after using Cytonorm Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

saeyslab/CytoNorm#35 · Opened Jul 18, 2022
CytoNorm not working in R 4.2 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#34 · 1 comment · Opened Jul 11, 2022
What type of data should be used? Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

saeyslab/CytoNorm#32 · 1 comment · Opened May 19, 2022
Error in t.default(data) : argument is not a matrix Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

saeyslab/CytoNorm#31 · Opened Apr 22, 2022
no output on cytonorm Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

saeyslab/CytoNorm#30 · 1 comment · Opened Jan 12, 2022
script is interrupted and doesn't produce output Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

saeyslab/CytoNorm#26 · Opened Jun 14, 2021
Error when normalizing one channel Open

Difficulty 2/5 1-3 hours Newbie friendliness 62/100

saeyslab/CytoNorm#22 · Opened May 25, 2021
License missing Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#21 · Opened May 19, 2021
FlowSOM fail on new normalized FCS files Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#20 · 5 comments · Opened Jan 27, 2021
script is interrupted Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

saeyslab/CytoNorm#16 · 2 comments · Opened Aug 16, 2020
nClus parameter not working Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

saeyslab/CytoNorm#14 · 3 comments · Opened Aug 4, 2020
Skipping the clustering Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

saeyslab/CytoNorm#13 · 3 comments · Opened Jul 22, 2020
Could CytoNorm impede discovery of novel clusters? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#10 · 8 comments · Opened Jun 8, 2020
Code proposal Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

saeyslab/CytoNorm#8 · Opened Apr 19, 2020
README.md Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

saeyslab/CytoNorm#7 · Opened Apr 19, 2020
some markers show artefacts after normalisation Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

saeyslab/CytoNorm#5 · 2 comments · Opened Feb 17, 2020
Infinite max range on normed FCS files Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

saeyslab/CytoNorm#4 · 5 comments · Opened Jan 17, 2020
Error in rep(NA, (width - length(x))) : invalid 'times' argument Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

saeyslab/CytoNorm#2 · 4 comments · Opened Nov 5, 2019

saeyslab/CytoNorm

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