rrwick/Bandage

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a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Stars: 679
Forks: 116
Open beginner issues: 0
Indexed issues: 79

Dominant language: C++
License: GPL-3.0
Last GitHub push: Jul 7, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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79 open issues indexed

Windows command-line error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#126 · Opened Mar 31, 2025
Parsing issue of CSV file in v0.9.0 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#125 · Opened Mar 5, 2025
bandage image with --lengths --depth options Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#124 · Opened Dec 11, 2024
save error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#123 · Opened Oct 23, 2024
.gfa file type unsupported on Windows Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

rrwick/Bandage#122 · Opened Oct 10, 2024
Can't open graph path files Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#121 · Opened Jun 17, 2024
Issue in opening mac terminal Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#120 · Opened May 8, 2024
Add size scale to static png´s. Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#119 · Opened Mar 18, 2024
help with compiling for bioconda Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#118 · 3 comments · 1 reaction · Opened May 25, 2023
can bandage display a verkko assembly? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

rrwick/Bandage#117 · Opened May 8, 2023
Bandage image Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#116 · 1 comment · Opened Mar 10, 2023
fasta file from other assembly Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

rrwick/Bandage#114 · 1 reaction · Opened Sep 23, 2022
Packaging and compiling Bandage Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

rrwick/Bandage#112 · Opened May 13, 2022
Overlaps counted twice in "Total length (no overlaps)" calculation? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#111 · 1 comment · Opened Apr 6, 2022
tilting BLAST hits titles Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

rrwick/Bandage#110 · Opened Feb 18, 2022
Bandage AppImage/AppDir requires the shared libraries libGL.so.1, libfontconfig.so.1, and libfreetype.so.6 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#108 · 5 comments · 1 reaction · Opened Jan 11, 2022
"save path sequence to fasta" command line option Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#106 · 1 comment · Opened Oct 27, 2021
Are you guys still working on this? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#102 · 1 comment · 1 reaction · Opened May 27, 2021
export bubble unitigs? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#101 · Opened Mar 10, 2021
Node Custom Properties Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

rrwick/Bandage#99 · Opened Oct 5, 2020
install error Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#98 · 8 comments · Opened Sep 16, 2020
command line Bandage: --names --lengths --depth only draws black rectangels Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#97 · 2 comments · Opened Aug 19, 2020
NCBI Blast Not Found on PC Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

rrwick/Bandage#94 · Opened Jul 30, 2020
Custom edge coloring Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

rrwick/Bandage#89 · Opened Apr 18, 2020
Specifying command line options result in error message about propagateSizeHints Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#88 · 2 comments · Opened Mar 24, 2020
qmake is not a directory Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#87 · Opened Mar 20, 2020
Color by Spades node name Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

rrwick/Bandage#86 · Opened Feb 14, 2020
three contigs are connecting by a black line, why? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

rrwick/Bandage#85 · Opened Jan 7, 2020
BLAST error: Too many positional arguments Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

rrwick/Bandage#84 · 1 comment · Opened Jan 3, 2020
Support for mapping with minimap2 Open

Difficulty 5/5 Over a week Newbie friendliness 32/100

rrwick/Bandage#83 · 1 comment · Opened Dec 12, 2019
0 edges for all assemblies Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

rrwick/Bandage#82 · 1 comment · Opened Oct 25, 2019
Blast against downloaded databases Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

rrwick/Bandage#81 · 1 comment · Opened May 6, 2019
Save image as svg/png with no background Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

rrwick/Bandage#80 · Opened Apr 29, 2019
Extract contigs Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#79 · Opened Apr 16, 2019
Bandage crashes when trying to load/view large/eukaryote assemblies Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

rrwick/Bandage#78 · 1 comment · Opened Feb 20, 2019
Workaround for compiling on Ubuntu 18.04 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#75 · 3 comments · Opened Oct 30, 2018
Merge all possible nodes from command line [feature request] Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#73 · 2 comments · Opened Oct 9, 2018
reduce: Filter by length [feature request] Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

rrwick/Bandage#72 · Opened Oct 5, 2018
SVG export impossible core dumped Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#71 · Opened Oct 2, 2018
is it possible to partially color nodes by csv import? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

rrwick/Bandage#70 · Opened Oct 2, 2018
SPAdes options Open

Difficulty 4/5 3-5 days Newbie friendliness 15/100

rrwick/Bandage#69 · Opened Sep 8, 2018
querypaths: Accept query in .fastq and .fastq.gz format [feature request] Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

rrwick/Bandage#68 · Opened Aug 21, 2018
Save an interactive graph layout to disk [feature request] Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

rrwick/Bandage#67 · 2 comments · Opened Aug 21, 2018
BLAST installation issue Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

rrwick/Bandage#66 · 3 comments · Opened Jun 29, 2018
Circular contigs in the graph file displayed with funky shapes Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#65 · 1 comment · 1 reaction · Opened May 14, 2018
static build Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

rrwick/Bandage#62 · Opened Mar 30, 2018
allow setting a larger node width and smaller zoom Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

rrwick/Bandage#61 · Opened Mar 28, 2018
Functionality to extract circular sequences Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

rrwick/Bandage#60 · 1 comment · Opened Mar 5, 2018
IDBA to GFA Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

rrwick/Bandage#59 · Opened Mar 2, 2018
The graph contains no nodes that can be merged Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

rrwick/Bandage#58 · 3 comments · Opened Feb 16, 2018

rrwick/Bandage

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