Error: pandoc document conversion failed with error 99
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Assessment
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Newbie friendliness
- 35/100
Research direction
Start by running the supplied R example with htmlwidgets::saveWidget and inspect the generated heatmap.html and heatmap_files resources involved in the Pandoc conversion. Trace why glyphicons-halflings-regular.eot is missing from the resource path; done means the reproducible conversion completes without the missing-resource or Pandoc error.
Written by the indexing model from the issue text.
Description
Code for reproducing:
library(morpheus)
x <- t(mtcars)
columnAnnotations <- data.frame(annotation1=1:32, annotation2=sample(LETTERS[1:3], ncol(x),
replace = TRUE))
o = morpheus(x,
colorScheme=list(scalingMode="relative", colors=heat.colors(3)),
columnAnnotations=columnAnnotations,
columns=list(list(field='id', display=list('text')), list(field='annotation2',
highlightMatchingValues=TRUE, display=list('color'))))
htmlwidgets::saveWidget(o,file = "heatmap.html", selfcontained = T)
Error:
File heatmap_files/morpheus-css-0.0.0\fonts/glyphicons-halflings-regular.eot not found in resource path
Error: pandoc document conversion failed with error 99
In addition: Warning message:
running command 'C:/PROGRA~2/Pandoc/pandoc +RTS -K512m -RTS C:\Users\Sili\Documents\Github\Abib.go\heatmap.html --from markdown --output C:\Users\Sili\Documents\Github\Abib.go\heatmap.html --self-contained --template C:\Users\Sili\AppData\Local\Temp\RtmpMVSgfk\file2618260a1d48.html' had status 99
- Dominant language
- R
- Stars
- 801
- Forks
- 203
- PR merge metrics
- No merged PRs in 30d
Getting set up
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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