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Hi,
I ran nullarbor with the make ref.fa preview. It ran fine and then I ran
make again make
And got the the following error. Can enone provide me with information on it?
Cheers,
P
[16:25:20] Saving /media/psf/Home/IMRL_Sequencing/GB_EARS_Net_2019/ST_Catagories/Nullarbor/Output/nullarbor.log [16:25:20] Writing Makefile [16:25:20] Run the full pipeline with: [16:25:20] nice make all -j 3 -l 8 -C Output 2>&1 | tee -a Output/nullarbor.log [16:25:20] Done. (base) peter@ubuntu:/media/psf/Home/IMRL_Sequencing/GB_EARS_Net_2019/ST_Catagories/Nullarbor/Output$ make samtools faidx ref.fa [faidx] Could not build fai index ref.fa.fai make: *** [Makefile:154: ref.fa.fai] Error 1 (base) peter@ubuntu:/media/psf/Home/IMRL_Sequencing/GB_EARS_Net_2019/ST_Catagories/Nullarbor/Output$ make ref.fa make: 'ref.fa' is up to date. (base) peter@ubuntu:/media/psf/Home/IMRL_Sequencing/GB_EARS_Net_2019/ST_Catagories/Nullarbor/Output$ make samtools faidx ref.fa [faidx] Could not build fai index ref.fa.fai make: *** [Makefile:154: ref.fa.fai] Error 1 (base) peter@ubuntu:/media/psf/Home/IMRL_Sequencing/GB_EARS_Net_2019/ST_Catagories/Nullarbor/Output$