Repositories

olgabot repositories

214 supported repositories

Show repositories with indexed issues
olgabot/10xdashC++

Pairwise similarity metrics for 10x barcoded RNASeq datasets

Last commit Dec 11, 2023

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2020-test-senchaJupyter Notebook

Last commit May 31, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2020-workflows-paperHTML

Strategies for leveraging workflow systems to streamline large-scale biological analyses

Last commit Jun 2, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2021-01-27-olga-remove-proteinStandard ML

Last commit Jan 28, 2021

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2021-paper-metapangenomesHTML

Last commit Jun 5, 2022

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2022-ced9-bcl2Standard ML

Structural homology between C. elegans Ced9 and human BCL2

Last commit Nov 6, 2024

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2022-mouse-lemur-tabula-microcebus

Code for cross-species and uTAR sequence homology analyses for two Tabula Microcebus papers

Last commit Sep 9, 2022

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2022-sourmash-multigather-kmer-stats

Do sourmash multigather, but use a background k-mer distribution model to quantify significance of matches, and report all matching k-mer sequences

Last commit Dec 1, 2022

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2022-sourmash-multisearchJupyter Notebook

Search multiple query k-mer signatures against a database

Last commit Feb 18, 2023

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/2023-functional-homology-paperHTML

Last commit Mar 15, 2024

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/Deedy-ResumeTeX

A one page , two asymmetric column resume template in XeTeX that caters to an undergraduate Computer Science student

Last commit Dec 2, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/FRC_alignC++

Computes FRC from SAM/BAM file and not from afg files

Last commit Aug 7, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/GPfatesPython

Last commit Feb 20, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/GSEApyPython

Gene Set Enrichment Analysis in Python

Last commit Jul 9, 2017

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
olgabot/Keras-genomicsPython

Perform hyper-parameter tuning, training, testing and prediction with Keras

Last commit Mar 29, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/MISOC

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

Last commit Jul 13, 2013

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/MultiQCPython

Aggregate results from bioinformatics analyses across many samples into a single report.

Last commit Jul 13, 2018

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/NouGATPython

Last commit Apr 5, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/OrthoFinderPython

Phylogenetic orthology inference for comparative genomics

Last commit Oct 8, 2021

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
olgabot/OrthologyOntology

Working draft of a common ontology for describing orthology resources

Last commit Oct 21, 2019

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)