nextflow-io/nextflow Issues | Good First Issue

Groovy (3,382 stars) (784 forks) (34 indexed issues) (PR metrics pending)Last commit May 15, 2026

Issues

34 open indexed issues

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Open

Expand `.splitCsv()` to allow comments in CSV and TSV files

good first issue

nextflow-io/nextflow #6,705 opened 5 months ago · Groovy · 3,382 stars

6 comments1 reaction0 assignees

Open

Adding a parameter for AnsiLogObserver delay

good first issue

nextflow-io/nextflow #6,518 opened 7 months ago · Groovy · 3,382 stars

1 comment0 reactions0 assignees

Open

Support shallow clones of submodules

good first issuesoftware/gitstale

nextflow-io/nextflow #6,301 opened 10 months ago · Groovy · 3,382 stars

0 comments2 reactions0 assignees

Open

Cumulative job duration (realtime) in the nextflow execution report

good first issuestale

nextflow-io/nextflow #6,298 opened 10 months ago · Groovy · 3,382 stars

0 comments0 reactions0 assignees

Open

COLUMNS environment variable not honored

good first issue

nextflow-io/nextflow #6,274 opened 11 months ago · Groovy · 3,382 stars

0 comments2 reactions0 assignees

Open

Add an env var which points to a config file for all pipelines

good first issuelang/config

nextflow-io/nextflow #6,151 opened last year · Groovy · 3,382 stars

4 comments0 reactions0 assignees

Open

Support for Pixi

good first issuestale

nextflow-io/nextflow #6,092 opened last year · Groovy · 3,382 stars

3 comments15 reactions0 assignees

Open

AWS Batch Fargate requires exact CPU values?

executor/aws-batchgood first issue

nextflow-io/nextflow #5,781 opened last year · Groovy · 3,382 stars

4 comments0 reactions0 assignees

Open

How to set the computing resources (cpus, memory) in total submitted jobs

executor/slurmgood first issuestale

nextflow-io/nextflow #5,702 opened last year · Groovy · 3,382 stars

6 comments0 reactions0 assignees

Open

A flag to remove quotation marks from index file

good first issuestale

nextflow-io/nextflow #5,546 opened last year · Groovy · 3,382 stars

1 comment0 reactions0 assignees

Open

moduleBinaries doesn't work with top-level module

buggood first issuelang/modules

nextflow-io/nextflow #5,288 opened 2 years ago · Groovy · 3,382 stars

3 comments1 reaction0 assignees

Open

Nextflow on POSIX breaking on input paths starting with hyphen / dash ('-')

good first issuesoftware/bash

nextflow-io/nextflow #5,186 opened 2 years ago · Groovy · 3,382 stars

1 comment0 reactions0 assignees

Open

Error when using Shifter as container runtime in Nextflow >23.08.0-edge

help wantedstale

nextflow-io/nextflow #5,115 opened 2 years ago · Groovy · 3,382 stars

1 comment0 reactions0 assignees

Open

"Missing project main script" error when there is a directory with the workflow name

error-improvementsgood first issue

nextflow-io/nextflow #5,073 opened 2 years ago · Groovy · 3,382 stars

3 comments0 reactions1 assignee

Open

splitCsv handles commas incorrectly when cells contain commas within quoted strings

good first issue

nextflow-io/nextflow #4,874 opened 2 years ago · Groovy · 3,382 stars

4 comments0 reactions0 assignees

Open

In Summary Report Task Table long process names overflow into adjacent cells

good first issuestale

nextflow-io/nextflow #4,752 opened 2 years ago · Groovy · 3,382 stars

2 comments0 reactions0 assignees

Open

In summary report, allow breakdowns by sub-workflow for processes

good first issuestale

nextflow-io/nextflow #4,751 opened 2 years ago · Groovy · 3,382 stars

2 comments0 reactions0 assignees

Open

Support container streaming for Google Batch

executor/google-batchgood first issue

nextflow-io/nextflow #4,719 opened 2 years ago · Groovy · 3,382 stars

3 comments0 reactions0 assignees

Open

Add hyperlinks to HTML DAG

good first issuestale

nextflow-io/nextflow #4,346 opened 3 years ago · Groovy · 3,382 stars

1 comment1 reaction0 assignees

Open

GPU usage metrics

good first issueplanned

nextflow-io/nextflow #4,286 opened 3 years ago · Groovy · 3,382 stars

8 comments5 reactions0 assignees