Single-Cell Analysis in Python. Scales to >1M cells.
Repositories
lmcinnes repositories
scikit-learn: machine learning in Python
Scipy library main repository
Scipy 2017 scikit-learn tutorial by Alex Gramfort and Andreas Mueller
Tutorial material and instruction for scipy 2018 jupyterlab tutorial
Statistical data visualization using matplotlib
Unsupervised text tokenizer for Neural Network-based text generation.
Python Example for SISAP 2026 Challenge
Semi-Supervised t-SNE using a Bayesian prior based on partial labelling
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Notebooks and data associated to constructing and exploring a map of subreddits.
Topological Density-based Clustering
A visual labeling system implemented in Jupyter widgets.
Uniform Manifold Approximation and Projection
Notebooks used to generate some of the UMAP documentation
Notebooks in support of the UMAP paper
Vectorizers for a range of different data types
Using the TIMC Document Vectorizers library