Owner

lcolladotor

3 indexed repositories · View on GitHub

biocthis
Automate package and project setup for Bioconductor packages

R · 56 stars
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

R · 45 stars
bioc_team_ds
R/Bioconductor-powered Team Data Science by Leonardo Collado Torres

HTML · 3 stars

Beginner friendly Everything

Open All

bioc_style() produces 6-space indents, violating the multiple-of-4 rule, and ignores indent_by Open

Difficulty 3/5 1-2 days Newbie friendliness 72/100

lcolladotor/biocthis#59 · Opened Sep 2, 2026
[Feature Request] Disable macOS and/or windows building Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

lcolladotor/biocthis#57 · Opened Oct 4, 2025
[Feature Request] documentation on Bioconductor release Open

Difficulty 2/5 1-3 hours Newbie friendliness 52/100

lcolladotor/biocthis#56 · Opened Oct 4, 2025
[Feature Request] Add use_data() functions to match match BioC data guidelines Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

lcolladotor/biocthis#55 · Opened Mar 24, 2025
[Help required] setting cutoff Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

lcolladotor/derfinder#46 · Opened Dec 4, 2023
Create video guide for biocthis Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

lcolladotor/biocthis#53 · Opened Dec 1, 2023
Translate course and intro documentation to Spanish Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lcolladotor/biocthis#52 · Opened Dec 1, 2023
Design a 2 day (max 3) workshop / short course Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

lcolladotor/biocthis#51 · Opened Dec 1, 2023
Add multilingual support for the dev scripts Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lcolladotor/biocthis#50 · Opened Dec 1, 2023
Anticipate breaking changes from usethis via a cron job on GHA Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lcolladotor/biocthis#49 · Opened Dec 1, 2023
Implement unit tests Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

lcolladotor/biocthis#48 · Opened Dec 1, 2023
Switch to using rlang and cli Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

lcolladotor/biocthis#47 · Opened Dec 1, 2023
Make current documentation more verbose Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lcolladotor/biocthis#46 · Opened Dec 1, 2023
More in depth guide for the /dev scripts for making new R/Bioconductor packages Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lcolladotor/biocthis#45 · Opened Dec 1, 2023
BiocParallel errors when running regionMat() Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lcolladotor/derfinder#45 · 1 comment · Opened Oct 27, 2023
[Feature Request] Add "shiny_support" parameter to the use_bioc_github_action function Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

lcolladotor/biocthis#44 · Opened Sep 6, 2023
Coverage matrix for regions Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

lcolladotor/derfinder#44 · 1 comment · Opened Aug 17, 2023
Standard object names Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

lcolladotor/bioc_team_ds#11 · Opened Jun 27, 2023
Add more videos Open

lcolladotor/bioc_team_ds#1 · 1 assignee · Opened Feb 2, 2022

lcolladotor

Get new issues in your inbox