lanl/BEE

View on GitHub

Stars: 22
Forks: 7
Open beginner issues: 0
Indexed issues: 163
Avg merge: 8d 16h
Merged PRs (30d): 5

Dominant language: Python
License: No license data
Last GitHub push: Sep 17, 2026
Latest indexed: Sep 18, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue

Beginner friendly Everything

Open All

163 open issues indexed

Partial Fail is Archived but the WF manager log continues to add entries Open

lanl/BEE#1227 · 2 comments · 1 assignee · Opened Jun 18, 2026
Beeflow Config New Error Open

good first issue

lanl/BEE#1221 · 2 comments · 1 assignee · Opened Jun 5, 2026
Modify beeflow submit to accept a new BEE workflow Open

Difficulty 3/5 1-2 days Newbie friendliness 66/100

lanl/BEE#1205 · Opened Apr 16, 2026
Change Workflow and Task Pydantic models and Remove Unneeded CWL pydantic models Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

lanl/BEE#1204 · Opened Apr 16, 2026
Update Documentation Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

lanl/BEE#1202 · Opened Apr 16, 2026
Remove CWL focused mocks from mocks.py in the tests directory Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

lanl/BEE#1201 · Opened Apr 16, 2026
Modify test_parser.py given the new API Open

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

lanl/BEE#1200 · Opened Apr 16, 2026
Replace test_cwl.py with tests for the API Open

Difficulty 3/5 1-2 days Newbie friendliness 62/100

lanl/BEE#1199 · Opened Apr 16, 2026
Update Example Workflows and BEE CI Workflows Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

lanl/BEE#1198 · Opened Apr 16, 2026
Change WF_Interface class to support new API Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

lanl/BEE#1197 · Opened Apr 16, 2026
Modify parser.py to directly convert a BEE python specification to a WF_Interface object Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

lanl/BEE#1196 · Opened Apr 16, 2026
Write Specification for new Python Workflow Description API Open

Difficulty 4/5 3-5 days Newbie friendliness 50/100

lanl/BEE#1195 · Opened Apr 16, 2026
Pivot from CWL Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

lanl/BEE#1194 · Opened Apr 16, 2026
Need to Discuss How to Properly Handle Getting Checkpoint, MPI, and Slurm Parameters Open

discuss

Difficulty 5/5 Over a week Newbie friendliness 35/100

lanl/BEE#1185 · 1 comment · Opened Mar 24, 2026
Add Programmatic Interface for Generating Config Files Open

enhancement

lanl/BEE#1174 · 1 assignee · Opened Feb 3, 2026
Add a parameter for not appending checkpoint filename for checkpoint/restart Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1164 · 1 comment · Opened Jan 5, 2026
Add slurm account and partition to Integration Tests Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

lanl/BEE#1163 · Opened Jan 5, 2026
Duplicate inputs from file for Slurm and MPI Requirements Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lanl/BEE#1161 · Opened Dec 15, 2025
Build Containers In Background Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1154 · Opened Dec 4, 2025
Completing Workflow can cause a problem if another workflow is submitted at that time Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

lanl/BEE#1151 · 1 comment · Opened Nov 20, 2025
Bad srun -V call in ci/slurm_start.sh Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

lanl/BEE#1143 · Opened Oct 21, 2025
Reset: Don't delete the deps directory so that the dependents do not need to be restored Open

lanl/BEE#1140 · 2 comments · 1 assignee · Opened Oct 16, 2025
Support Non-File Outputs Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

lanl/BEE#1135 · Opened Sep 2, 2025
Evaluating Expressions in Outputs Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

lanl/BEE#1132 · Opened Aug 26, 2025
Graphml enhancements Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

lanl/BEE#1131 · 1 comment · Opened Aug 26, 2025
Container Runtime (CRT) should not use DockerRequirements Open

CRT-Container Runtime

Difficulty 5/5 Over a week Newbie friendliness 30/100

lanl/BEE#1127 · Opened Aug 11, 2025
Automatically set config up for Flux if the system has flux Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1117 · Opened Jul 22, 2025
Check for Charliecloud causes exception when no module system is present Open

next sprint

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

lanl/BEE#1116 · 1 comment · Opened Jul 22, 2025
Dependent jobs should be able to run even after failed jobs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1114 · 2 comments · Opened Jul 17, 2025
Use Data Science Infrastructure to store Workflow Metadata Open

lanl/BEE#1113 · 1 assignee · Opened Jul 17, 2025
Circular Import Between bee_client and core Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1108 · Opened Jul 14, 2025
Beeflow Core Status Failing After Beeflow Core Start Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

lanl/BEE#1107 · Opened Jul 14, 2025
Store More Task Metadata Open

lanl/BEE#1104 · 1 assignee · Opened Jul 11, 2025
Make sure on ``beeflow core stop`` that neo4j has stopped before allowing the user to start again. Open

next sprint

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lanl/BEE#1100 · Opened Jul 10, 2025
Add Proper Logging for Neo4j Database Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1099 · Opened Jul 9, 2025
pre_script/post_script should be relative to the workdir Open

lanl/BEE#1093 · 2 comments · 1 assignee · Opened Jul 8, 2025
Use FastAPI Instead of Flask Restful Open

dependencies enhancement Med Priority task manager Workflow Manager

lanl/BEE#1090 · 1 assignee · Opened Jul 3, 2025
Container runtime evoked when there are no container requirements Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lanl/BEE#1088 · Opened Jul 2, 2025
graph is too large Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

lanl/BEE#1086 · 3 comments · Opened Jun 25, 2025
Archive only cwl and input files instead of the entire directory they are contained in. Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lanl/BEE#1085 · 2 comments · Opened Jun 25, 2025
Graphml conversion utility Open

lanl/BEE#1082 · 1 assignee · Opened Jun 17, 2025
Sort combined coverage by missed lines Open

Low Priority testing

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lanl/BEE#1073 · Opened May 27, 2025
ScriptRequirement Should be Enabled by Default Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

lanl/BEE#1061 · Opened May 5, 2025
Canceled cypher query Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

lanl/BEE#1058 · 1 comment · Opened Apr 29, 2025
Configuration for clusters that share user space Open

core

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1050 · Opened Apr 16, 2025
Job environment is not clean Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

lanl/BEE#1048 · 1 comment · Opened Apr 15, 2025
BEE API requires a file (Output) to make parent-child dependency Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

lanl/BEE#1047 · 1 comment · Opened Apr 15, 2025
BEE API requires an Input() in order for workflow to run Open

lanl/BEE#1044 · 1 assignee · Opened Apr 15, 2025
Cancelling Workflow Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

lanl/BEE#1041 · 1 comment · Opened Apr 10, 2025
Pausing an archived workflow Open

bug next sprint

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lanl/BEE#1038 · Opened Apr 9, 2025

lanl/BEE

Get new issues in your inbox