help wanted
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説明
Trying to understand a discrepancy between my much loved mlst vs CGE webtool (https://cge.cbs.dtu.dk/services/).
I have an isolate of S.suis, sequenced with Illumina > denovo assembled contigs generated with unicycler.
I am getting 100% match on an allele with CGE (mutS_408) but in mlst I am getting "novel" allele (mutS_317).
When I take that novel allele output and run through CGE i get 100% match to CGE allele (mutS_408).
All inputs for mlst are default except for --novel and --csv flags.
Just trying to figure out where i might be generating errors.
love your work, thank you for maintaining mlst.