Pip install cyclicbm==0.0.9 fails with gcc version == 11.4

Inizia dall’errore del compilatore alla riga 134 di src/cbm.h e confronta la correzione proposta in PR #17. Riproduci il fallimento di pip install cyclicbm==0.0.9 su Ubuntu 22.04 con Python 3.8.16 e gcc 11.4; il lavoro è considerato completato quando il pacchetto si installa correttamente e la causa principale è documentata.

I have been trying to install cyclicbm on my machine and failing to do so (error below). I have created this PR to fix the issue and it's working for me, however since my C/C++ knowledge is very limited, please advise regarding the root cause of the problem. Thank you!

  × Building editable for cyclicbm (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [104 lines of output]
      running editable_wheel
      creating /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info
      writing /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/PKG-INFO
      writing dependency_links to /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/dependency_links.txt
      writing requirements to /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/requires.txt
      writing top-level names to /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/top_level.txt
      writing manifest file '/tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/SOURCES.txt'
      reading manifest file '/tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      warning: no files found matching '*.c' under directory 'src'
      adding license file 'LICENSE'
      writing manifest file '/tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm.egg-info/SOURCES.txt'
      creating '/tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm-0.0.9.dist-info'
      creating /tmp/pip-wheel-9w1cy4ni/.tmp-e50tis6z/cyclicbm-0.0.9.dist-info/WHEEL
      running build_py
      running build_ext
      building 'cbm_cpp' extension
      creating /tmp/tmpdwzr6_2q.build-temp/src
      gcc -pthread -B /home/truonghm/work/simcel/simcel-core/CELPY/Library/.conda/forecaster/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/pybind11/include -I/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/pybind11/include -Isrc -I/home/truonghm/work/simcel/simcel-core/CELPY/Library/.conda/forecaster/include/python3.8 -c src/cbm.cpp -o /tmp/tmpdwzr6_2q.build-temp/src/cbm.o -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -std=c++11 -Wall -Wextra -march=native -msse2 -ffast-math -mfpmath=sse -fopenmp -lgomp
      cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
      gcc -pthread -B /home/truonghm/work/simcel/simcel-core/CELPY/Library/.conda/forecaster/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/pybind11/include -I/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/pybind11/include -Isrc -I/home/truonghm/work/simcel/simcel-core/CELPY/Library/.conda/forecaster/include/python3.8 -c src/pycbm.cpp -o /tmp/tmpdwzr6_2q.build-temp/src/pycbm.o -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -std=c++11 -Wall -Wextra -march=native -msse2 -ffast-math -mfpmath=sse -fopenmp -lgomp
      cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
      In file included from src/pycbm.h:10,
                       from src/pycbm.cpp:4:
      src/cbm.h: In member function ‘void cbm::CBM::fit_internal(const uint32_t*, const char*, size_t, size_t, size_t, size_t, double, const uint32_t*, double, size_t, size_t, double, bool, float (*)(const uint32_t*, const double*, size_t))’:
      src/cbm.h:134:33: error: ‘numeric_limits’ is not a member of ‘std’
        134 |             double rmse0 = std::numeric_limits<double>::infinity();
            |                                 ^~~~~~~~~~~~~~
      src/cbm.h:134:48: error: expected primary-expression before ‘double’
        134 |             double rmse0 = std::numeric_limits<double>::infinity();
            |                                                ^~~~~~
      Traceback (most recent call last):
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/unixccompiler.py", line 185, in _compile
          self.spawn(compiler_so + cc_args + [src, '-o', obj] + extra_postargs)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/ccompiler.py", line 1041, in spawn
          spawn(cmd, dry_run=self.dry_run, **kwargs)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/spawn.py", line 70, in spawn
          raise DistutilsExecError(
      distutils.errors.DistutilsExecError: command '/usr/bin/gcc' failed with exit code 1
      
      During handling of the above exception, another exception occurred:
      
      Traceback (most recent call last):
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 156, in run
          self._create_wheel_file(bdist_wheel)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 345, in _create_wheel_file
          files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 268, in _run_build_commands
          self._run_build_subcommands()
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/editable_wheel.py", line 295, in _run_build_subcommands
          self.run_command(name)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command
          self.distribution.run_command(command)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/dist.py", line 1233, in run_command
          super().run_command(command)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/build_ext.py", line 88, in run
          _build_ext.run(self)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
          self.build_extensions()
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
          self._build_extensions_serial()
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
          self.build_extension(ext)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/command/build_ext.py", line 249, in build_extension
          _build_ext.build_extension(self, ext)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/command/build_ext.py", line 548, in build_extension
          objects = self.compiler.compile(
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/ccompiler.py", line 600, in compile
          self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts)
        File "/tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/unixccompiler.py", line 187, in _compile
          raise CompileError(msg)
      distutils.errors.CompileError: command '/usr/bin/gcc' failed with exit code 1
      /tmp/pip-build-env-x9cbfyq7/overlay/lib/python3.8/site-packages/setuptools/_distutils/dist.py:988: _DebuggingTips: Problem in editable installation.
      !!

Other information

• OS: Ubuntu 22.4
• gcc version: 11.4
• python version: 3.8.16