Schema salad error validating CWL enum definitions
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Valutazione
- Difficoltà
- 4/5
- Tempo stimato
- 3-5 giorni
- Idoneità per principianti
- 35/100
Direzione di ricerca
Inizia con l’esempio CWL nell’issue e riproduci il fallimento tramite cwltool/builder.py, quindi segui la costruzione dello schema in schema_salad/avro/schema.py. Confronta le due definizioni dell’enum scenario e conferma che la validazione abbia esito positivo sia per la forma singola sia per quella array, senza l’errore di nome duplicato.
Scritto dal modello di indicizzazione a partire dal testo della issue.
Descrizione
Description
I have a CWL definition as presented below that reuses type: enum in multiple definitions to allow null (optional), single-value and an array of those values for some of my inputs.
Expected Behavior
The CWL definition should be valid.
Actual Behavior
For some reason, schema salad raises an error indicating that 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' (schema auto-generated from scenario input definition?) already exists. I wonder if this is a false-positive because of the definitions repeats the exact same enum portion for the single value vs multi-value array types?
type:
- "null"
- {"type": "enum", "symbols": [...]}
- type: array
items: {"type": "enum", "symbols": [...]}
Workflow Code
cwlVersion: v1.0
class: CommandLineTool
hints:
WPS1Requirement:
provider: https://finch.crim.ca/wps
process: ensemble_grid_point_wetdays
requirements:
InlineJavascriptRequirement: {}
inputs:
- id: lat
type:
- string
- type: array
items: string
- id: lon
type:
- string
- type: array
items: string
- id: start_date
type:
- 'null'
- string
- id: end_date
type:
- 'null'
- string
- id: ensemble_percentiles
type:
- 'null'
- string
default: 10,50,90
- id: average
type:
- 'null'
- boolean
default: false
- id: dataset
type:
- 'null'
- type: enum
symbols:
- humidex-daily
- candcs-u5
- candcs-u6
- bccaqv2
default: candcs-u5
- id: scenario
type:
- 'null'
- type: enum
symbols:
- ssp126
- rcp85
- rcp45
- rcp26
- ssp585
- ssp245
- type: array
items:
type: enum
symbols:
- ssp126
- rcp85
- rcp45
- rcp26
- ssp585
- ssp245
- id: models
type:
- 'null'
- type: enum
symbols:
- KACE-1-0-G
- CCSM4
- MIROC5
- EC-Earth3-Veg
- TaiESM1
- GFDL-ESM4
- GFDL-CM3
- CanESM5
- HadGEM3-GC31-LL
- INM-CM4-8
- IPSL-CM5A-MR
- EC-Earth3
- GFDL-ESM2G
- humidex_models
- GFDL-ESM2M
- MIROC-ESM
- CSIRO-Mk3-6-0
- MPI-ESM-LR
- NorESM1-M
- CNRM-CM5
- all
- GISS-E2-1-G
- 24models
- MPI-ESM1-2-HR
- CNRM-ESM2-1
- CNRM-CM6-1
- CanESM2
- FGOALS-g3
- NorESM1-ME
- IPSL-CM6A-LR
- CMCC-ESM2
- pcic12
- EC-Earth3-Veg-LR
- ACCESS-ESM1-5
- MRI-CGCM3
- MIROC-ESM-CHEM
- NorESM2-MM
- bcc-csm1-1-m
- BNU-ESM
- UKESM1-0-LL
- CESM1-CAM5
- MIROC-ES2L
- MRI-ESM2-0
- HadGEM2-ES
- MIROC6
- MPI-ESM-MR
- INM-CM5-0
- bcc-csm1-1
- BCC-CSM2-MR
- ACCESS-CM2
- NorESM2-LM
- IPSL-CM5A-LR
- FGOALS-g2
- HadGEM2-AO
- 26models
- MPI-ESM1-2-LR
- KIOST-ESM
- type: array
items:
type: enum
symbols:
- KACE-1-0-G
- CCSM4
- MIROC5
- EC-Earth3-Veg
- TaiESM1
- GFDL-ESM4
- GFDL-CM3
- CanESM5
- HadGEM3-GC31-LL
- INM-CM4-8
- IPSL-CM5A-MR
- EC-Earth3
- GFDL-ESM2G
- humidex_models
- GFDL-ESM2M
- MIROC-ESM
- CSIRO-Mk3-6-0
- MPI-ESM-LR
- NorESM1-M
- CNRM-CM5
- all
- GISS-E2-1-G
- 24models
- MPI-ESM1-2-HR
- CNRM-ESM2-1
- CNRM-CM6-1
- CanESM2
- FGOALS-g3
- NorESM1-ME
- IPSL-CM6A-LR
- CMCC-ESM2
- pcic12
- EC-Earth3-Veg-LR
- ACCESS-ESM1-5
- MRI-CGCM3
- MIROC-ESM-CHEM
- NorESM2-MM
- bcc-csm1-1-m
- BNU-ESM
- UKESM1-0-LL
- CESM1-CAM5
- MIROC-ES2L
- MRI-ESM2-0
- HadGEM2-ES
- MIROC6
- MPI-ESM-MR
- INM-CM5-0
- bcc-csm1-1
- BCC-CSM2-MR
- ACCESS-CM2
- NorESM2-LM
- IPSL-CM5A-LR
- FGOALS-g2
- HadGEM2-AO
- 26models
- MPI-ESM1-2-LR
- KIOST-ESM
default: all
- id: thresh
type:
- 'null'
- string
default: 1.0 mm/day
- id: freq
type:
- 'null'
- type: enum
symbols:
- YS
- QS-DEC
- AS-JUL
- MS
default: YS
- id: op
type:
- 'null'
- type: enum
symbols:
- '>='
- '>'
- gt
- ge
default: '>='
- id: month
type:
- 'null'
- int
- type: array
items: int
inputBinding:
valueFrom: "\n ${\n const values = [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12];\n if (Array.isArray(self)) {\n \n if (self.every(item => values.includes(item))) {\n return self;\n }\n else {\n throw \"invalid value(s) in [\" + self + \"] are not all allowed values from [\" + values + \"]\";\n }\n \n }\n else {\n \n if (values.includes(self)) {\n return self;\n }\n else {\n throw \"invalid value \" + self + \" is not an allowed value from [\" + values + \"]\";\n }\n \n }\n }\n "
- id: season
type:
- 'null'
- type: enum
symbols:
- SON
- MAM
- JJA
- DJF
- id: check_missing
type:
- 'null'
- type: enum
symbols:
- pct
- at_least_n
- wmo
- skip
- from_context
- any
default: any
- id: missing_options
type:
- 'null'
- File
format: iana:application/json
- id: cf_compliance
type:
- 'null'
- type: enum
symbols:
- raise
- log
- warn
default: warn
- id: data_validation
type:
- 'null'
- type: enum
symbols:
- raise
- log
- warn
default: raise
- id: output_name
type:
- 'null'
- string
- id: output_format
type:
- 'null'
- type: enum
symbols:
- csv
- netcdf
default: netcdf
- id: csv_precision
type:
- 'null'
- int
outputs:
- id: output
type: File
format: iana:application/zip
outputBinding:
glob: output/*.zip
- id: output_log
type: File
format: edam:format_1964
outputBinding:
glob: output_log/*.*
$namespaces:
iana: https://www.iana.org/assignments/media-types/
edam: http://edamontology.org/
Full Traceback
[2023-09-15 17:58:32,863] ERROR [MainThread][cwltool] Got workflow error
Traceback (most recent call last):
File "schema_salad/avro/schema.py", line 405, in __init__
File "schema_salad/avro/schema.py", line 595, in make_avsc_object
File "schema_salad/avro/schema.py", line 373, in __init__
File "schema_salad/avro/schema.py", line 253, in __init__
File "schema_salad/avro/schema.py", line 219, in add_name
schema_salad.avro.schema.SchemaParseException: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 218, in run_jobs
for job in jobiter:
File "/home/francis/dev/weaver/weaver/processes/wps_workflow.py", line 133, in job
builder = self._init_job(job_order, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/process.py", line 888, in _init_job
builder.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 330, in bind_input
self.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 249, in bind_input
avsc = make_avsc_object(convert_to_dict(t), self.names)
File "schema_salad/avro/schema.py", line 608, in make_avsc_object
File "schema_salad/avro/schema.py", line 407, in __init__
schema_salad.avro.schema.SchemaParseException: Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).
[2023-09-15 17:58:32,869] ERROR [MainThread][weaver.processes.wps_package|ensemble_grid_point_wetdays] 10% failed Failed package execution.
weaver.exceptions.PackageExecutionError: [Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).]
Traceback (most recent call last):
File "schema_salad/avro/schema.py", line 405, in __init__
File "schema_salad/avro/schema.py", line 595, in make_avsc_object
File "schema_salad/avro/schema.py", line 373, in __init__
File "schema_salad/avro/schema.py", line 253, in __init__
File "schema_salad/avro/schema.py", line 219, in add_name
schema_salad.avro.schema.SchemaParseException: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 218, in run_jobs
for job in jobiter:
File "/home/francis/dev/weaver/weaver/processes/wps_workflow.py", line 133, in job
builder = self._init_job(job_order, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/process.py", line 888, in _init_job
builder.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 330, in bind_input
self.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 249, in bind_input
avsc = make_avsc_object(convert_to_dict(t), self.names)
File "schema_salad/avro/schema.py", line 608, in make_avsc_object
File "schema_salad/avro/schema.py", line 407, in __init__
schema_salad.avro.schema.SchemaParseException: Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/francis/dev/weaver/weaver/processes/wps_package.py", line 1791, in _handler
result = package_inst(**cwl_inputs) # type: CWL_Results
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/factory.py", line 32, in __call__
out, status = self.factory.executor(self.t, kwargs, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 62, in __call__
return self.execute(process, job_order_object, runtime_context, logger)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 145, in execute
self.run_jobs(process, job_order_object, logger, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 252, in run_jobs
raise WorkflowException(str(err)) from err
cwltool.errors.WorkflowException: Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).
[2023-09-15 17:58:32,877] INFO [MainThread][PYWPS] Removing temporary working directory: /tmp/weaver-hybrid/workdir/pywps_process_xb524u2x
[2023-09-15 17:58:32,877] INFO [MainThread][weaver.processes.wps_package|ensemble_grid_point_wetdays] 10% failed Package completed with errors. Server logs: [/tmp/weaver-hybrid/outputs/public/fa7d748f-bff0-4729-9a57-331d9402c232.log], Available at: [http://127.0.0.1:4003/fa7d748f-bff0-4729-9a57-331d9402c232.log]
Traceback (most recent call last):
File "schema_salad/avro/schema.py", line 405, in __init__
File "schema_salad/avro/schema.py", line 595, in make_avsc_object
File "schema_salad/avro/schema.py", line 373, in __init__
File "schema_salad/avro/schema.py", line 253, in __init__
File "schema_salad/avro/schema.py", line 219, in add_name
schema_salad.avro.schema.SchemaParseException: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 218, in run_jobs
for job in jobiter:
File "/home/francis/dev/weaver/weaver/processes/wps_workflow.py", line 133, in job
builder = self._init_job(job_order, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/process.py", line 888, in _init_job
builder.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 330, in bind_input
self.bind_input(
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/builder.py", line 249, in bind_input
avsc = make_avsc_object(convert_to_dict(t), self.names)
File "schema_salad/avro/schema.py", line 608, in make_avsc_object
File "schema_salad/avro/schema.py", line 407, in __init__
schema_salad.avro.schema.SchemaParseException: Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/francis/dev/weaver/weaver/processes/wps_package.py", line 1791, in _handler
result = package_inst(**cwl_inputs) # type: CWL_Results
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/factory.py", line 32, in __call__
out, status = self.factory.executor(self.t, kwargs, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 62, in __call__
return self.execute(process, job_order_object, runtime_context, logger)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 145, in execute
self.run_jobs(process, job_order_object, logger, runtime_context)
File "/home/francis/dev/miniconda/envs/weaver-py3/lib/python3.10/site-packages/cwltool/executors.py", line 252, in run_jobs
raise WorkflowException(str(err)) from err
cwltool.errors.WorkflowException: Items schema ({'type': 'enum', 'symbols': ['rcp85', 'ssp585', 'rcp45', 'rcp26', 'ssp126', 'ssp245'], 'name': 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920'}) not a valid Avro schema: The name 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920' is already in use.. Known names: ['org.w3id.cwl.cwl.File', 'org.w3id.cwl.cwl.File.class.File_class', 'org.w3id.cwl.cwl.Directory', 'org.w3id.cwl.cwl.Directory.class.Directory_class', 'org.w3id.cwl.salad.Any', 'input_record_schema', 'dataset90820b54-cca1-4b50-a6b8-558586135e1d', 'scenario6ece3ca2-f45b-42a7-bf85-95a22443a85e', 'scenario1b4d8bed-8ce2-4a0b-a0ad-194203993920', 'models525a2682-565c-4dde-ace5-76ccfe6254f3', 'models6861d088-8f09-43fa-89d1-b18b587e1d22', 'freqc7b201ea-ef19-4831-a3ca-18b0b7381e71', 'op8846f2fd-6b5f-4e85-9722-dd220a0df24d', 'seasonde3dd417-c9e6-412a-bf73-e4e1b9e7382f', 'check_missing75883605-bd85-47fc-8e0d-c5ed227b7ee8', 'cf_compliance66d87015-cd60-4e20-b43c-f5edb890d758', 'data_validation0143577c-6989-487c-b5b5-3362b677d2ac', 'output_format0a80ac59-d5ff-414a-9b63-9c34ad11b6c7', 'outputs_record_schema']).
Your Environment
- cwltool version: 3.1.20230906142556
Check usingcwltool --version
- Lingua principale
- Python
- Stelle
- 376
- Fork
- 255
- Merge medio
- 13h 4m
- PR unite (30g)
- 11
Preparare l'ambiente
- Nessun Dockerfile né file Docker Compose
- Nessun modello di pull request
- Leggi la guida per i contributori
Come iniziare
- Leggi tutta la issue e poi la guida ai contributi del progetto.
- Commenta sulla issue per dire che te ne occupi tu — evita che due persone facciano lo stesso lavoro.
- Fai un fork del repository e lavora su un branch.
- Apri una pull request che faccia riferimento al numero della issue.
Altre issue di common-workflow-language/cwltool
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Difficoltà 2/5 1-3 ore Idoneità per principianti 78/100
common-workflow-language/cwltool#2296 ·
I maintainer di solito rispondono entro 1 giorno
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Resolving images with `_IMAGES` in `SingularityCommandLineJob` appears to write back to the wrong fieldForse già presa @Sanjays2402 l’ha presa 88 giorni fa. Aperta
Difficoltà 2/5 1-3 ore Idoneità per principianti 68/100
common-workflow-language/cwltool#2283 ·
I maintainer di solito rispondono entro 1 giorno
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--provenance fails a successful run when two data files share a basenameForse già presa @vjaganat90 l’ha presa 1 giorno fa. Aperta
Difficoltà 2/5 1-3 ore Idoneità per principianti 25/100
common-workflow-language/cwltool#2369 ·
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Difficoltà 4/5 3-5 giorni Idoneità per principianti 35/100
common-workflow-language/cwltool#2353 · 5 commenti ·
I maintainer di solito rispondono entro 1 giorno
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Difficoltà 3/5 1-2 giorni Idoneità per principianti 65/100
common-workflow-language/cwltool#2343 ·
I maintainer di solito rispondono entro 1 giorno
Tutte le issue di common-workflow-language/cwltool
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