Add ability to run the reference proteome step on the full peptide sequence in a fasta
Nobody has claimed this yet.
Assessment
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Newbie friendliness
- 30/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- python
- Domain
- bioinformatics
Research direction
Start by locating the reference proteome step in the pVACtools code and tracing how peptide sequences are read from FASTA input. Clarify the expected behavior for running that step on the full peptide sequence, then add coverage showing the full-sequence case is processed successfully.
Written by the indexing model from the issue text.
Description
This issue has no description.
- Dominant language
- Python
- Stars
- 192
- Forks
- 82
- Avg merge
- 3h 34m
- Merged PRs (30d)
- 1
Getting set up
This project ships no dev container, Dockerfile or contributing guide, so setting up is up to you: start from its README, and see our first-contribution guide for the general steps.
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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