Add retry when calls to standalone IEDB fail

Open
#762 10 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Assessment

Difficulty
3/5
Estimated time
1-2 days
Newbie friendliness
35/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Stale
Tech stack
python

Research direction

Start by locating the request paths for NetMHC, NetMHCIIpan, NetMHCcons, and NetMHCpan, then inspect how request errors currently stop execution. The issue is done when temporary request failures retry instead of requiring a rerun, while persistent failures still receive appropriate handling.

Written by the indexing model from the issue text.

Description

when request data from NetMHC,NetMHCIIpan,NetMHCcons,NetMHCpan, the program may stop of request error, but can recue when rerun, so is it convenient for you to add retry functions like https://github.com/jd/tenacity

Thanks a lot

Dominant language
Python
Stars
192
Forks
82
Avg merge
3h 34m
Merged PRs (30d)
1

Getting set up

This project ships no dev container, Dockerfile or contributing guide, so setting up is up to you: start from its README, and see our first-contribution guide for the general steps.

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

More from griffithlab/pVACtools

All issues in griffithlab/pVACtools

Similar issues

More Python issues

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.