Consider use of APE-Gen algorithm
Nobody has claimed this yet.
Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 20/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- python
- Domain
- bioinformatics
Research direction
Start by reading the linked APE-Gen repository and identifying the current pMHC prediction entry points in pVACtools. Compare how APE-Gen's 3D structure modeling could fit alongside the existing algorithms; the issue does not define an implementation scope or a concrete done condition.
Written by the indexing model from the issue text.
Description
From the ITCR meeting. APE-Gen would be quite orthogonal to the current algorithms for pMHC prediction as it is based on 3D structure modeling of the pMHC
- Dominant language
- Python
- Stars
- 191
- Forks
- 82
- Avg merge
- 3h 34m
- Merged PRs (30d)
- 1
Getting set up
This project ships no dev container, Dockerfile or contributing guide, so setting up is up to you: start from its README, and see our first-contribution guide for the general steps.
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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