galaxyproject/loom

Stars: 14
Forks: 12
Open beginner issues: 3
Indexed issues: 134
Avg merge: 4d 4h
Merged PRs (30d): 17

Dominant language: TypeScript
License: MIT
Last GitHub push: Sep 17, 2026
Latest indexed: Sep 16, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

Loom, ready to run: the path forward Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#489 · Opened Sep 18, 2026
Harness rails: the trust slice Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#488 · Opened Sep 18, 2026
/workflow: adapt a Galaxy workflow through Foundry's pipeline, with the plan lowered in code Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#487 · Opened Sep 18, 2026
First run without a key: what stops a new user today, and the zero-key path Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

galaxyproject/loom#486 · Opened Sep 18, 2026
Orbit's slash popup should come from the brain, not a hardcoded list Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

galaxyproject/loom#485 · Opened Sep 18, 2026
Find and run a community (IWC) workflow from a plain-language question Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#484 · Opened Sep 18, 2026
The system prompt tells the model to call `galaxy_search_iwc`, which doesn't exist Open

Difficulty 3/5 1-2 days Newbie friendliness 78/100

galaxyproject/loom#483 · Opened Sep 18, 2026
Measure the rails: gate audit, checked-claims metrics, a paired pilot Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#482 · Opened Sep 18, 2026
Mock Galaxy server, recorder, and fixtures for the harness tests Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#481 · Opened Sep 18, 2026
The stranger handoff: every loom block round-trips through a Galaxy Page and someone else reruns it Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#480 · Opened Sep 18, 2026
/extract-workflow and /rerun: fresh history, rebound inputs, a comparison report Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#479 · Opened Sep 18, 2026
Step 0 on usegalaxy.eu: what extract, Page attachment and a scoped key actually give us Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#478 · Opened Sep 18, 2026
Scientific assertions: build, input population, output shape, claim Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#477 · Opened Sep 18, 2026
Approval and attempt registry: `loom_propose` / `loom_submit` and a record the model can't author Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#476 · Opened Sep 18, 2026
Evidence gate: get out of warn mode Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#475 · Opened Sep 18, 2026
Block scanners ignore outer Markdown fences, so a loom block inside an example is treated as live Open

Difficulty 4/5 3-5 days Newbie friendliness 68/100

galaxyproject/loom#474 · Opened Sep 18, 2026
Capture, part two: reconcile, enrich, and note drift on every recorded run Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#473 · Opened Sep 18, 2026
Orbit/Galaxy MCP: a configured Galaxy URL ending in `/api` regenerates the doubled `/api/api` 404 from config Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 55/100

galaxyproject/loom#454 · Opened Sep 8, 2026
Orbit: make the "Galaxy job finished — ask me to verify" message actionable with a one-click button Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#451 · Opened Sep 7, 2026
appendShellNote writes to a channel nothing listens to Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

galaxyproject/loom#447 · Opened Aug 29, 2026
Provider auth metadata is duplicated three ways with nothing guarding the drift Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

galaxyproject/loom#440 · Opened Aug 20, 2026
Ship a container image for running Loom/Orbit with full permissions in a disposable environment Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#434 · Opened Aug 20, 2026
Model-picker price tags come from pi-ai's bundled registry and go stale (DeepSeek raised prices) Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#433 · Opened Aug 20, 2026
Orbit exits with Electron `FATAL ... Failed to shutdown` instead of quitting cleanly Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 45/100

galaxyproject/loom#431 · Opened Aug 20, 2026
`loom --mode json` fails immediately with "Agent is already processing" whenever Galaxy credentials are present Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

galaxyproject/loom#424 · 2 comments · Opened Aug 13, 2026
Orbit/Galaxy MCP: every pages tool builds a doubled `/api/api/pages` URL and 404s Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 70/100

galaxyproject/loom#420 · Opened Aug 13, 2026
Run multiple analyses at once: a herd view, and the per-session state it needs Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#417 · 1 comment · Opened Aug 12, 2026
Galaxy tool runs are invisible to the poller, so the agent stalls until nudged Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

galaxyproject/loom#413 · Opened Aug 12, 2026
Agent teams in Orbit: pi-agents-team feasibility and alternatives Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

galaxyproject/loom#407 · 1 comment · Opened Aug 11, 2026
Orbit: agent asks "Shall I proceed?" instead of pointing at the plan card's Approve/Edit/Reject buttons Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 55/100

galaxyproject/loom#400 · 1 reaction · Opened Aug 7, 2026
Orbit: no way to search/find text in the chat history Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#379 · 1 reaction · Opened Jul 15, 2026
Orbit: permission prompt should pre-select the first option and support keyboard navigation (arrows/numbers) Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#378 · 1 reaction · Opened Jul 15, 2026
Orbit: "Trust this workspace (stop asking for routine commands)" does not stop asking for weak-tier models -- it only downgrades deny->ask Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

galaxyproject/loom#376 · 1 reaction · Opened Jul 15, 2026
Orbit/Galaxy MCP: `galaxy_run_tool` docs say `dataset_id` but only the HDA `id` works -- wrong field yields a misleading "Required parameter(s) kwd not provided" error Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 45/100

galaxyproject/loom#375 · 1 reaction · Opened Jul 15, 2026
Orbit: no persistent way to give the agent output-style directives (e.g. CommonMark-safe markdown with blank lines around lists) Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 38/100

galaxyproject/loom#374 · 2 comments · Opened Jul 11, 2026
Configure and switch between multiple Galaxy instances in Orbit (e.g. usegalaxy.org and .eu) Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#369 · 1 comment · Opened Jul 1, 2026
Orbit: agent answers "why did my job fail?" by resuming an inaccessible history (403) and hallucinating a failure explanation Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 45/100

galaxyproject/loom#367 · Opened Jul 1, 2026
Galaxy footer indicator reflects only config, not liveness — show amber/red on unreachable/failed calls Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#362 · Opened Jun 26, 2026
Harden HTML preview CSP: deliver as response header, not injected <meta> Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

galaxyproject/loom#361 · Opened Jun 25, 2026
Orbit: start screen / recent-analyses picker + in-analysis chat switching Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#357 · 1 comment · Opened Jun 25, 2026
Orbit: validate downloaded files' content type/signature; warn when extension doesn't match actual content Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#356 · Opened Jun 25, 2026
Orbit: $7+0 < 0.05 awk filter counts NA/missing padj as significant, inflating DEG counts Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 55/100

galaxyproject/loom#355 · 1 comment · Opened Jun 25, 2026
GCC User Feedback Session Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

galaxyproject/loom#353 · Opened Jun 25, 2026
Orbit: add a toggle to suppress agent-generated job-monitoring scripts Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 45/100

galaxyproject/loom#349 · Opened Jun 22, 2026
Orbit: agent can't read a dataset referenced by its visible HID -- "Invalid id length, must be multiple of 16" Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 50/100

galaxyproject/loom#348 · Opened Jun 21, 2026
Orbit desktop app: no in-app update affordance (check-for-updates / auto-update) Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

galaxyproject/loom#347 · Opened Jun 21, 2026
Windows: Squirrel Setup.exe blocked by nuget MAX_PATH on the deeply-nested staged bundle Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

galaxyproject/loom#343 · Opened Jun 19, 2026
Let users interrupt a running turn to edit and re-run the previous prompt Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

galaxyproject/loom#340 · Opened Jun 19, 2026
Make the Orbit skills:refresh transactional Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

galaxyproject/loom#332 · Opened Jun 19, 2026
Share the Orbit e2e launch harness and strengthen the skills-refresh smoke Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

galaxyproject/loom#333 · Opened Jun 19, 2026

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