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sokrypton/7.571Jupyter Notebook

7.571 - Quantitative Analysis of Biological Data Material

Dernier commit 10 mars 2026

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sokrypton/AM216Jupyter Notebook

Material for lecture

Dernier commit 14 août 2024

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sokrypton/AccAdam_TF2Python

TF2-compatible Accumulated Gradients for Adam

Dernier commit 18 mars 2022

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sokrypton/AfDesign_partialJupyter Notebook

WIP

Dernier commit 7 juil. 2022

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sokrypton/CIRPINJupyter Notebook

Source code for CIRPIN: Learning Circular Permutation-Invariant Representations to Uncover Putative Protein Homologs

Dernier commit 4 déc. 2025

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sokrypton/ChaiFolder

Dernier commit 13 mars 2026

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sokrypton/ColabBioJupyter Notebook

random colab notebooks for biology

Dernier commit 23 août 2025

 (26 stars) (3 forks) (0 issues indexées) (0 good first issues ouvertes)
sokrypton/ColabDesignPython

Making Protein Design accessible to all via Google Colab!

Dernier commit 23 oct. 2025

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sokrypton/ColabDesign_paramsJupyter Notebook

params moved to seperate repo

Dernier commit 14 juil. 2023

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sokrypton/ColabFoldJupyter Notebook

Making Protein folding accessible to all!

Dernier commit 29 avr. 2026

 (2 776 stars) (722 forks) (2 issues indexées) (2 good first issues ouvertes)
sokrypton/DeepLearningExamplesJupyter Notebook

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

Dernier commit 22 mai 2023

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sokrypton/EMBOIntegModelling23Jupyter Notebook

Dernier commit 22 sept. 2023

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sokrypton/GREMLINMATLAB

GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.

Dernier commit 3 juil. 2016

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sokrypton/GREMLIN-GUIHTML

Dernier commit 20 févr. 2026

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sokrypton/GREMLIN_CNNJupyter Notebook

Dernier commit 24 oct. 2019

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sokrypton/GREMLIN_CPPJupyter Notebook

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

Dernier commit 17 oct. 2022

 (60 stars) (25 forks) (0 issues indexées) (0 good first issues ouvertes)
sokrypton/GREMLIN_LHJupyter Notebook

Dernier commit 14 mars 2025

 (8 stars) (3 forks) (0 issues indexées) (0 good first issues ouvertes)
sokrypton/HelixFoldPython

Dernier commit 5 août 2022

 (9 stars) (4 forks) (0 issues indexées) (0 good first issues ouvertes)
sokrypton/LigandMPNNPython

Dernier commit 16 oct. 2025

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sokrypton/OmegaFoldPython

OmegaFold Release Code

Dernier commit 6 août 2022

 (7 stars) (5 forks) (0 issues indexées) (0 good first issues ouvertes)