Incorrect sourcemap sources paths when outDir differs from source directory

Start in packages/typescript/src/outputFile.ts, specifically findTypescriptOutput, and reproduce the issue with the linked project using npm install, npm run build, and jq on dist/project-1/index.js.map. Trace how the emitted sourcemap sources are returned and ensure the final sources resolve to my-project-1/src/test.ts as ../../my-project-1/src/test.ts.

• Rollup Plugin Name: @rollup/plugin-typescript
• Rollup Plugin Version: 12.3.0
• Rollup Version: 4.59.0
• Operating System (or Browser): Linux (reproducible on any OS)
• Node Version: v24.13.0
• Link to reproduction: https://stackblitz.com/~/github.com/skrtheboss/rollup-repro-5sqw8ygm
• May be ralated to: #1948

Expected Behavior

When the TypeScript source files live in a different directory tree than the outDir, the final bundled sourcemap should contain correct relative sources paths that resolve back to the actual .ts files.

For the reproduction project with source at my-project-1/src/test.ts and output at dist/project-1/, the sourcemap should contain:

"sources": ["../../my-project-1/src/test.ts"]

Resolving from the map file's directory: resolve("dist/project-1", "../../my-project-1/src/test.ts") → my-project-1/src/test.ts ✅

Actual Behavior

The sourcemap contains an incorrect path with one extra ../ level:

"sources": ["../../../my-project-1/src/test.ts"]

Resolving from the map file's directory: resolve("dist/project-1", "../../../my-project-1/src/test.ts") → goes above the project root ❌

This breaks source mapping in browsers, debuggers, and any other sourcemap consumer.

Additional Information

Root cause

TypeScript emits sourcemaps with sources paths relative to the output map file location (inside outDir). For example, when compiling my-project-1/src/test.ts with outDir: "../dist/project-1", TypeScript would write dist/project-1/src/test.js.map containing:

{ "sources": ["../../../my-project-1/src/test.ts"], "sourceRoot": "." }

This is correct when resolved from the map file's directory (dist/project-1/src/):

path.resolve("dist/project-1/src", ".", "../../../my-project-1/src/test.ts")
→ "my-project-1/src/test.ts" ✅

However, @rollup/plugin-typescript returns this sourcemap verbatim from the load hook. Rollup's getCollapsedSourcemap then resolves these source paths relative to path.dirname(id) — the original source file's directory (my-project-1/src/), not the output map file's directory:

path.resolve("my-project-1/src", ".", "../../../my-project-1/src/test.ts")
→ "../my-project-1/src/test.ts"  (one level above project root) ❌

The mismatch occurs in findTypescriptOutput (packages/typescript/src/outputFile.ts), which returns the TypeScript-emitted sourcemap without rebasing the sources paths from the output directory to the source file directory.

Steps to reproduce

git clone https://github.com/skrtheboss/rollup-repro-5sqw8ygm
cd rollup-repro-5sqw8ygm
npm install
npm run build
cat dist/project-1/index.js.map | jq .sources
# Actual:   ["../../../my-project-1/src/test.ts"]  ❌
# Expected: ["../../my-project-1/src/test.ts"]      ✅