eastgenomics/eggd_dias_batch

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DNAnexus app to launch reports workflows for Dias pipeline

Stars: 1
Forks: 1
Open beginner issues: 0
Indexed issues: 11

Dominant language: Python
License: No license data
Last GitHub push: May 19, 2025
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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11 open issues indexed

Before launching CNV calling check requisite number of samples are present Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 62/100

eastgenomics/eggd_dias_batch#234 · Opened Jul 10, 2026
Fail when files not found for a sample instead of reporting warning Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

eastgenomics/eggd_dias_batch#232 · Opened May 22, 2026
eggd_dias_batch doesn't report all of the jobs it launched Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

eastgenomics/eggd_dias_batch#231 · Opened Sep 10, 2025
Use replace to rename artemis inputs for better compatibility Open

Difficulty 2/5 1-3 hours Newbie friendliness 52/100

eastgenomics/eggd_dias_batch#230 · 3 comments · Opened Jul 23, 2025
Stop eggd_artemis waiting for all jobs to finish when CNV calling is true but CNV reports false Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

eastgenomics/eggd_dias_batch#229 · Opened Jun 13, 2025
Missing patterns for segments file + annotated excluded intervals file to unarchive for artemis Open

Difficulty 1/5 Under an hour Newbie friendliness 78/100

eastgenomics/eggd_dias_batch#228 · 2 comments · Opened Jun 3, 2025
Update Ubuntu / Python version used in app and GitHub Action Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

eastgenomics/eggd_dias_batch#225 · Opened May 16, 2025
initial unarchive check doesn't use CNV job ID for excluded intervals bed check Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

eastgenomics/eggd_dias_batch#221 · Opened Sep 9, 2024
Add an option to ignore samples in manifest Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

eastgenomics/eggd_dias_batch#187 · 3 comments · Opened Feb 1, 2024
automate CNV indications stripping Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

eastgenomics/eggd_dias_batch#178 · 2 comments · Opened Jan 9, 2024
eggd_dias_batch mosaic calling Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

eastgenomics/eggd_dias_batch#163 · Opened Dec 12, 2023

eastgenomics/eggd_dias_batch

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