Repositories

sokrypton Repositories

59 unterstützte Repositories

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sokrypton/7.571Jupyter Notebook

7.571 - Quantitative Analysis of Biological Data Material

Letzter Commit 10. März 2026

 (4 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/AM216Jupyter Notebook

Material for lecture

Letzter Commit 14. Aug. 2024

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/AccAdam_TF2Python

TF2-compatible Accumulated Gradients for Adam

Letzter Commit 18. März 2022

 (1 Star) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
sokrypton/AfDesign_partialJupyter Notebook

WIP

Letzter Commit 7. Juli 2022

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/CIRPINJupyter Notebook

Source code for CIRPIN: Learning Circular Permutation-Invariant Representations to Uncover Putative Protein Homologs

Letzter Commit 4. Dez. 2025

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/ChaiFolder

Letzter Commit 13. März 2026

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/ColabBioJupyter Notebook

random colab notebooks for biology

Letzter Commit 23. Aug. 2025

 (26 Stars) (3 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/ColabDesignPython

Making Protein Design accessible to all via Google Colab!

Letzter Commit 23. Okt. 2025

 (914 Stars) (224 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/ColabDesign_paramsJupyter Notebook

params moved to seperate repo

Letzter Commit 14. Juli 2023

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/ColabFoldJupyter Notebook

Making Protein folding accessible to all!

Letzter Commit 29. Apr. 2026

 (2.776 Stars) (722 Forks) (2 indexierte Issues) (2 offene good first issues)
sokrypton/DeepLearningExamplesJupyter Notebook

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

Letzter Commit 22. Mai 2023

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/EMBOIntegModelling23Jupyter Notebook

Letzter Commit 22. Sept. 2023

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/GREMLINMATLAB

GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.

Letzter Commit 3. Juli 2016

 (25 Stars) (7 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/GREMLIN-GUIHTML

Letzter Commit 20. Feb. 2026

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/GREMLIN_CNNJupyter Notebook

Letzter Commit 24. Okt. 2019

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/GREMLIN_CPPJupyter Notebook

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

Letzter Commit 17. Okt. 2022

 (60 Stars) (25 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/GREMLIN_LHJupyter Notebook

Letzter Commit 14. März 2025

 (8 Stars) (3 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/HelixFoldPython

Letzter Commit 5. Aug. 2022

 (9 Stars) (4 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/LigandMPNNPython

Letzter Commit 16. Okt. 2025

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
sokrypton/OmegaFoldPython

OmegaFold Release Code

Letzter Commit 6. Aug. 2022

 (7 Stars) (5 Forks) (0 indexierte Issues) (0 offene good first issues)