3D-geometric-deep-learning-in-drugs
Repositories
rdk Repositories
:wave: Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa.
A curated list of awesome Bioinformatics libraries and software.
A Python implementation of global optimization with gaussian processes.
Cloud-based Drug Binding Structure Prediction
Wiki for Creality Helper Script
DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design
Here, we provide all datasets used for DoGSite binding site prediction performance analyses.
A fast implementation of the Random Forest algorithm for the Weka environment
Fast Random Forests implementatios for Java.
Java library with optimized implementation of NumericalSurfece from CDK
A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)
Hierarchical Reasoning Model Official Release
A simplified wrapper for the Insight Java API
Java Delaunay Triangulation