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Repositories
GuangchuangYu Repositories
Background information about me.
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Guangchuang's blog
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This is a XeLatex template for PhD students of The University of Hong Kong.
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Port of the classic Octopress theme to Hugo
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Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
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phylogenetic placement format (jplace) exporter
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Analyses of MERS-CoV outbreaks
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GuangchuangYu/MERS_recombinationJupyter Notebook
Does MERS-CoV recombine?
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Code accompanying the book "Machine Learning for Hackers"
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MetaMicrobiome: an R package for the meta-analysis and visualization of microbiome.
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Code and data for Spielman and Wilke, The relationship between dN/dS and scaled selection coefficients, Mol. Biol. Evol. 2015.
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My solutions to Robert Sedgewick's fantastic Princeton courses on Algorithms/Data Structures (http://algs4.cs.princeton.edu/home/) and Intro to Programming in Java (http://introcs.cs.princeton.edu/java/home/)
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Info and materials for the RevBayes workshop held at NIMBioS
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Some string algorithms, from Dan Gusfield's "Algorithms on Strings, Trees and Sequences" and elsewhere
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An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
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An R package for making antibody landscapes
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Repository for course materials for the antigenic cartography and antibody landscapes course 2019
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analysis of phylogenetics and evolution
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