YuLab-SMU/ReactomePA

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Reactome Pathway Analysis

Stars: 46
Forks: 10
Open beginner issues: 0
Indexed issues: 19

Dominant language: R
License: No license data
Last GitHub push: Jul 9, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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19 open issues indexed

gsePathway() does not expose or forward the eps argument to enrichit Open

Difficulty 2/5 1-3 hours Newbie friendliness 76/100

YuLab-SMU/ReactomePA#47 · 1 comment · Opened Sep 9, 2026
enrichPathway doesn't run inside tryCatch Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/ReactomePA#46 · Opened Apr 30, 2026
viewPathway() colors Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

YuLab-SMU/ReactomePA#45 · 2 comments · Opened Jul 11, 2025
Missing dependency on graphlayouts Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

YuLab-SMU/ReactomePA#44 · Opened Nov 28, 2024
can Arabidopsis run this function? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/ReactomePA#41 · Opened Sep 20, 2023
P-value correction for multiple testing necessary? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

YuLab-SMU/ReactomePA#40 · Opened Jan 16, 2023
ReactomePA plot label text overlap Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/ReactomePA#38 · Opened May 18, 2022
Support non decreasing sorts in reactome pathway analysis Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

YuLab-SMU/ReactomePA#37 · 1 reaction · Opened Jan 6, 2022
Specify minimal package versions in the Description file Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

YuLab-SMU/ReactomePA#35 · 2 comments · Opened Nov 30, 2021
Difference between Kobas-i, Reactome website and ReactomePA (may caused by duplicated background genes) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/ReactomePA#33 · Opened Oct 18, 2021
WES data Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

YuLab-SMU/ReactomePA#30 · Opened Sep 18, 2020
organism avaialble? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

YuLab-SMU/ReactomePA#29 · Opened Sep 18, 2020
enrichPathway Open

Difficulty 3/5 1-2 days Newbie friendliness 15/100

YuLab-SMU/ReactomePA#26 · Opened Apr 27, 2020
"No gene can be mapped" when running enrichPathway Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/ReactomePA#24 · 4 comments · Opened Jan 23, 2020
Cannot extract results from enrichPathway Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

YuLab-SMU/ReactomePA#21 · 4 comments · Opened Nov 12, 2018
Cannot change cnetplot edge thickness and color Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

YuLab-SMU/ReactomePA#19 · 2 comments · Opened Aug 30, 2018
Unable to produce graphics with enrichMap() Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

YuLab-SMU/ReactomePA#13 · Opened Nov 17, 2017
enrichPathway make readable does not work for yeast genome Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

YuLab-SMU/ReactomePA#12 · 7 comments · Opened Sep 5, 2017
Input structure of Gene Set Enrichment Analysis Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

YuLab-SMU/ReactomePA#10 · 6 comments · Opened Nov 10, 2016

YuLab-SMU/ReactomePA

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