The normalisation in getpcoa() function does not work
Nobody has claimed this yet.
Assessment
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Newbie friendliness
- 35/100
Research direction
Start by reproducing the get_pcoa() calls with distmethod="bray" and method="log", then trace the normalization path that produces the logical-subscript error. Done means the log-normalized call completes and returns a PCoA result without the reported error.
Written by the indexing model from the issue text.
Description
Hi, I tried to use
PCoA_res <-
get_pcoa(obj = ps_object, distmethod = "bray")
It worked well. But when I do
PCoA_res <-
get_pcoa(obj = ps_object, distmethod = "bray", method = "log")
It says:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'otu_table': (subscript) logical subscript too long
- Dominant language
- R
- Stars
- 195
- Forks
- 36
- PR merge metrics
- No merged PRs in 30d
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