如何调整Biomarker可视化过程中,显示label的数量
Nobody has claimed this yet.
Assessment
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Newbie friendliness
- 35/100
- Issue type
- Feature
- Clarity
- Mostly clear
- Activity status
- Stale
- Tech stack
- r
- Domain
- data-visualization
Research direction
Start with the R plotting block shown in the issue, especially the td_filter(nodeClass == "Phylum") data passed to geom_hilight. Determine how the phylum abundance ranking and the requested top-ten-plus-other display should be represented, then verify that the resulting visualization shows only those labels.
Written by the indexing model from the issue text.
Description
老师好,我想知道在这一步该怎么调整label的数量,调整成显示丰度前10的门,其余可以合并为other之类的显示格式
display the high light of phylum clade.
p2 <- p1 +
geom_hilight(
data = td_filter(nodeClass == "Phylum"),
mapping = aes(node = node, fill = label)
)
我在可视化自己的数据,这一步显示出来的门太多了
- Dominant language
- R
- Stars
- 195
- Forks
- 36
- PR merge metrics
- No merged PRs in 30d
Getting set up
This project ships no dev container, Dockerfile or contributing guide, so setting up is up to you: start from its README, and see our first-contribution guide for the general steps.
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from YuLab-SMU/MicrobiotaProcess
-
Difficulty 3/5 1-2 days Newbie friendliness 35/100
YuLab-SMU/MicrobiotaProcess#136 ·
-
Difficulty 1/5 Under an hour Newbie friendliness 25/100
YuLab-SMU/MicrobiotaProcess#134 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 35/100
YuLab-SMU/MicrobiotaProcess#133 ·
-
Bracken to MPSEOpen
Difficulty 5/5 Over a week Newbie friendliness 25/100
YuLab-SMU/MicrobiotaProcess#132 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 35/100
YuLab-SMU/MicrobiotaProcess#131 ·
All issues in YuLab-SMU/MicrobiotaProcess
Similar issues
-
Component: R
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
Maintainers usually reply within 2 days
-
bug pixi-build-r
Difficulty 2/5 1-3 hours Newbie friendliness 70/100
prefix-dev/pixi#7229 ·
Maintainers usually reply within 1 day
-
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
-
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
rstudio/reticulate#1933 ·
-
Difficulty 1/5 Under an hour Newbie friendliness 62/100