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YeoLab repositories

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YeoLab/PyCharm-Python-TemplatesPython

Python Templates for the PyCharm IDE

Last commit May 27, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/SONARPython

A program to construct SVM model and get classification scores for predicting RNA-binding proteins with given PPI network and RBP annotation list

Last commit Oct 3, 2022

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/anchorPython

:anchor: Find bimodal, unimodal, and multimodal features in your data

Last commit Jul 14, 2017

 (27 stars) (12 forks) (0 indexed issues) (0 open good first issues)
YeoLab/bodymap2

Flotilla package of Illumina bodymap data

Last commit Dec 10, 2014

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/bonvoyagePython

:triangular_ruler: Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

Last commit Jun 29, 2017

 (9 stars) (3 forks) (0 indexed issues) (0 open good first issues)
YeoLab/clip_analysis_legacyPython

Last commit May 15, 2022

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
YeoLab/clipperPython

A tool to identify CLIP-seq peaks

Last commit Oct 31, 2025

 (72 stars) (45 forks) (0 indexed issues) (0 open good first issues)
YeoLab/eCLIPCommon Workflow Language

Last commit Sep 29, 2022

 (42 stars) (25 forks) (0 indexed issues) (0 open good first issues)
YeoLab/eclipdemuxPython

demultiplex utility for eclip raw fastq files (process eclip barcodes and ramdomers)

Last commit Jul 16, 2021

 (1 star) (6 forks) (0 indexed issues) (0 open good first issues)
YeoLab/flotillaJupyter Notebook

Reproducible machine learning analysis of gene expression and alternative splicing data

Last commit Apr 19, 2017

 (125 stars) (25 forks) (0 indexed issues) (0 open good first issues)
YeoLab/flotilla_test_data

scrambled data for testing flotilla functionality

Last commit Dec 3, 2014

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/gffutilsPython

GFF and GTF file manipulation and interconversion

Last commit Mar 1, 2013

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/gscriptsPython

General Use Scripts and Helper functions

Last commit Mar 29, 2018

 (16 stars) (17 forks) (0 indexed issues) (0 open good first issues)
YeoLab/hcpPython

Python port of Hierarchical Covariate with Prior from Matlab code

Last commit Oct 25, 2014

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/merge_peaksShell

Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks

Last commit Sep 29, 2021

 (10 stars) (7 forks) (0 indexed issues) (0 open good first issues)
YeoLab/onboardingShell

Getting started in the yeolab

Last commit May 29, 2020

 (3 stars) (2 forks) (0 indexed issues) (0 open good first issues)
YeoLab/outriggerPython

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

Last commit Apr 10, 2020

 (67 stars) (22 forks) (0 indexed issues) (0 open good first issues)
YeoLab/peak-simulatorPython

A tool to simulate CLIP-seq peaks

Last commit Aug 9, 2012

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
YeoLab/qtoolsPython

qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python

Last commit Sep 9, 2021

 (21 stars) (2 forks) (0 indexed issues) (0 open good first issues)
YeoLab/rbp-mapsPython

splicing and feature maps for RBPs

Last commit Apr 19, 2022

 (25 stars) (9 forks) (0 indexed issues) (0 open good first issues)