VEuPathDB/veupathUtils

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A collection of general purpose R helper functions for use in the VEuPathDB project.

Stars: 0
Forks: 1
Open beginner issues: 0
Indexed issues: 15

Dominant language: R
License: Apache-2.0
Last GitHub push: Mar 25, 2026
Latest indexed: Sep 21, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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15 open issues indexed

Add t-test for antibody array Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#59 · Opened Dec 15, 2025
add P_VALUE_FLOOR sysdata Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#58 · Opened Nov 21, 2025
dependencies are a mess Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#57 · 10 comments · Opened Apr 8, 2025
Add vst to pca function Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

VEuPathDB/veupathUtils#55 · Opened Jan 3, 2025
Add a prefiltering step to remove lowly expressed genes Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

VEuPathDB/veupathUtils#53 · Opened Nov 4, 2024
Get github actions tests passing Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#51 · Opened Oct 23, 2024
Improve display labels returned from getDiscretizedBins Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

VEuPathDB/veupathUtils#35 · 1 comment · Opened Jan 10, 2024
Map - imputing zeroes doesn't seem to impute enough zeroes Open

VEuPathDB/veupathUtils#31 · 9 comments · 1 assignee · Opened Dec 1, 2023
Map - profile megastudy/zero imputation-related methods Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#30 · 1 comment · Opened Nov 20, 2023
Map Imputing Zeroes: refactor R util function Open

technical debt

Difficulty 5/5 Over a week Newbie friendliness 25/100

VEuPathDB/veupathUtils#24 · Opened Aug 21, 2023
Add method that checks if two BinLists overlap Open

VEuPathDB/veupathUtils#22 · 1 assignee · Opened Aug 17, 2023
warnWithTime and stopWithTime Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

VEuPathDB/veupathUtils#6 · Opened Feb 25, 2022
rename me Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VEuPathDB/veupathUtils#5 · Opened Feb 22, 2022
strSplit breaks for some edge cases Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

VEuPathDB/veupathUtils#2 · Opened Nov 2, 2021
matchArg types and their conversion seem unintuitive Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VEuPathDB/veupathUtils#1 · Opened Nov 2, 2021

VEuPathDB/veupathUtils

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