Bugs for protein input
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Assessment
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Newbie friendliness
- 25/100
- Issue type
- Bug
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- python
- Domain
- bioinformatics
Research direction
Reproduce the issue using the --protein input and the GBK file produced by deepbgc prepare, then inspect the generated .bgc.tsv output. Done means the protein_ids, bio_pfam_ids, and pfam_ids fields are populated when valid protein input is supplied.
Written by the indexing model from the issue text.
Description
@prihoda Hi! I may find a bug that:
The output file (*.bgc.tsv) does not have "protein_ids bio_pfam_ids pfam_ids" (empyt), no matter use protein file (--protein ) or change the protein file into gbk file (deepbgc prepare).
- Dominant language
- Jupyter Notebook
- Stars
- 161
- Forks
- 29
- PR merge metrics
- No merged PRs in 30d
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