[Question] How can I use precomputed genes via GFF format with DeepBGC?

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Assessment

Difficulty
5/5
Estimated time
Over a week
Newbie friendliness
25/100
Issue type
Feature
Clarity
Mostly clear
Activity status
Stale
Tech stack
python
Domain
bioinformatics

Research direction

Start by reviewing DeepBGC's command-line input handling and how it invokes Pyrodigal. Determine whether precomputed gene models in GFF can be supplied for the 50k genomes; done means documenting a working command or defining the required future support if it is not currently possible.

Written by the indexing model from the issue text.

Description

I have already run Pyrodigal on ~50k genomes and would like to run DeepBGC on these genomes without rerunning Pyrodigal in the backend. Is there similar usage to antiSMASH where precompute gene models can be provided via GFF? If so, what command can I run? If not, would this be in scope to add in a future update?

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Forks
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