MIC-DKFZ/batchgenerators

View on GitHub

A framework for data augmentation for 2D and 3D image classification and segmentation

Stars: 1.2k
Forks: 231
Open beginner issues: 0
Indexed issues: 40

Dominant language: Jupyter Notebook
License: Apache-2.0
Last GitHub push: Jun 16, 2026
Latest indexed: Sep 21, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

40 open issues indexed

code segment about scale Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#137 · Opened Nov 10, 2025
MultiThreadedAugmenter threads stuck waiting on out_queue to empty Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

MIC-DKFZ/batchgenerators#134 · 1 comment · Opened Mar 4, 2025
Workers die when using only one GPU since version 0.25.1 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#133 · 1 comment · 2 reactions · Opened Feb 20, 2025
I don't get the reason for disabling less specific imports Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#132 · Opened Dec 18, 2024
Deprecation Warnings Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#128 · Opened Nov 6, 2024
nnunetv2_plan_and_preprocess Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MIC-DKFZ/batchgenerators#125 · Opened Aug 28, 2024
Logging should not be done with the root logger Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

MIC-DKFZ/batchgenerators#123 · Opened Jul 12, 2024
Publish new version of batchgenerator for using Misalignment DA Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#122 · Opened Jul 12, 2024
from batchgenerators.dataloading import SingleThreadedAugmenter？ Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

MIC-DKFZ/batchgenerators#116 · 1 comment · Opened Nov 10, 2023
fillup_pad disappeared? Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#112 · Opened May 11, 2023
RuntimeError Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#111 · 7 comments · Opened Feb 6, 2023
ImportError: cannot import name 'MultiThreadedAugmenter' from 'batchgenerators.dataloading' Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#110 · 2 comments · Opened Jan 18, 2023
Proposal: reproducibility in DataLoader Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

MIC-DKFZ/batchgenerators#105 · 2 comments · Opened Aug 10, 2022
Why twice crop in Brats example? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#104 · Opened Aug 10, 2022
How to do batchgenerator on many images in a folder? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#103 · Opened Jul 17, 2022
Data type for both input images and labels Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#102 · Opened Jul 16, 2022
How can we use batchgenerators offline Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#101 · Opened Jul 15, 2022
Suggestion of multiprocess mechanism in MultiThreadedAugmenter Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

MIC-DKFZ/batchgenerators#100 · Opened Jul 8, 2022
Question about multithreading: Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MIC-DKFZ/batchgenerators#98 · Opened May 18, 2022
About 3D augmentation Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#97 · Opened Apr 24, 2022
MultiThreadedAugmenter issues Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

MIC-DKFZ/batchgenerators#94 · 4 comments · Opened Mar 24, 2022
Multiprocessing problem under Windows Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#92 · 1 comment · Opened Dec 29, 2021
RuntimeError: Abort event was set. So someone died and we should end this madness. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#91 · 1 comment · Opened Oct 27, 2021
General question on per sampel augmentation Open

Difficulty 1/5 Under an hour Newbie friendliness 20/100

MIC-DKFZ/batchgenerators#87 · 1 comment · Opened Oct 7, 2021
Random rotations are not uniformly sampled Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#84 · 11 comments · Opened Aug 5, 2021
Remove deprecated unittest2 lib Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#77 · 3 comments · Opened Apr 13, 2021
Bottleneck at "utils.py:interpolate_img" with larger datasets Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#74 · 12 comments · Opened Dec 4, 2020
not all Transforms have a p_per_sample parameter Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#73 · 2 comments · Opened Dec 3, 2020
Hope to know more details about your work in BraTS2018 challenge Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

MIC-DKFZ/batchgenerators#68 · 2 comments · Opened Oct 20, 2020
Error in augment_gamma with retain_stats Open

Difficulty 1/5 Under an hour Newbie friendliness 52/100

MIC-DKFZ/batchgenerators#67 · 4 comments · Opened Sep 22, 2020
[Question] SpatialTransform_2 vs SpatialTransform? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#65 · 4 comments · Opened Sep 9, 2020
about file: batchgenerators/examples/brats2017/brats2017_dataloader_3D.py Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

MIC-DKFZ/batchgenerators#64 · Opened Aug 8, 2020
How can I iterate my dataset and make sure each sample is used only once? Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MIC-DKFZ/batchgenerators#63 · 1 comment · Opened Jul 18, 2020
Training with `MultiThreadedAugmenter` stops too early? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#62 · Opened Jun 10, 2020
MultiThreadedAugmenter questions Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#61 · Opened Jun 5, 2020
AttributeError when calling restart() of multithreadaugmentor Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#60 · 1 comment · Opened Jun 3, 2020
Make elastic transform faster Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#56 · 1 comment · 1 reaction · Opened Mar 23, 2020
DataLoader for object detection Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#54 · 3 comments · Opened Jan 3, 2020
Slowdown with latest release Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MIC-DKFZ/batchgenerators#44 · 16 comments · Opened Sep 9, 2019
Reason for **kwargs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MIC-DKFZ/batchgenerators#15 · 18 comments · Opened Feb 1, 2019

MIC-DKFZ/batchgenerators

Get new issues in your inbox