Upgrade to PyTorch Geometric 2.x

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
35/100
Issue type
Refactor
Clarity
Mostly clear
Activity status
Stale
Tech stack
python, pytorch
Domain
machine-learning

Research direction

Start with install.sh at line 58 and inspect the package code for assumptions tied to PyTorch Geometric versions below 2. Review the PyTorch Geometric 2.0 release notes, then verify that installation and the existing project functionality still work with the upgraded version.

Written by the indexing model from the issue text.

Description

When we are installing our package, we make sure to check that PyTorch Geometric version is <2:
https://github.com/BlueBrain/morphoclass/blob/915309a13857bcad6a913763f2a66ace78183944/install.sh#L58

The 2.0 is out since 2021-09, so we should upgrade our PyTorch Geometric version, after making sure that everything in our code still works fine.

For a list of the new features introduced in PyTorch Geometric 2.x, see here.

Dominant language
Python
Stars
12
Forks
6
No merged PRs in 30d

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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