BlueBrain/VessMorphoVis

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A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.

Stars: 50
Forks: 5
Open beginner issues: 0
Indexed issues: 40

Dominant language: Python
License: GPL-3.0
Last GitHub push: Dec 14, 2023
Latest indexed: Sep 14, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

40 open issues indexed

Isolate the optional dependencies Open

bug enhancement

BlueBrain/VessMorphoVis#70 · 1 assignee · Opened Dec 5, 2023
Integration of mesh optimization code in NMV and VMV Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/VessMorphoVis#68 · Opened Nov 28, 2023
Add an option to draw a simplified version of the morphology Open

enhancement

BlueBrain/VessMorphoVis#67 · 1 comment · 1 assignee · Opened Nov 16, 2023
Add VMV export option in the Morphology Visualization toolbox. Open

enhancement

BlueBrain/VessMorphoVis#66 · 1 assignee · Opened Nov 16, 2023
Adding support to add geometric noise on the surfaces of the resulting meshes Open

enhancement

BlueBrain/VessMorphoVis#65 · 1 assignee · Opened Nov 14, 2023
Random color coding of the different objects in the morphology Open

enhancement

BlueBrain/VessMorphoVis#64 · 1 assignee · Opened Nov 14, 2023
Color-coding sections on a point-by-point basis. Open

enhancement

BlueBrain/VessMorphoVis#63 · 1 assignee · Opened Nov 14, 2023
Draw percentage of the given dataset Open

enhancement

BlueBrain/VessMorphoVis#59 · 1 assignee · Opened Oct 18, 2023
CLI Bugs Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

BlueBrain/VessMorphoVis#58 · 1 comment · Opened Oct 15, 2023
MorphIO cannot be installed on macOSX Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

BlueBrain/VessMorphoVis#57 · Opened Oct 9, 2023
Installing the addon Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

BlueBrain/VessMorphoVis#56 · 5 comments · Opened Oct 7, 2023
Fix the setup script for macOS installation with new machines Open

bug

BlueBrain/VessMorphoVis#49 · 1 assignee · Opened Jan 4, 2023
Add LTS support to VessMorphoVis with Blender 3.3.2 Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/VessMorphoVis#48 · Opened Jan 4, 2023
Keep the samples list in the morphology structure Open

enhancement

BlueBrain/VessMorphoVis#46 · 1 assignee · Opened Nov 16, 2022
Render XYZ composition in the same image as a collage Open

enhancement

BlueBrain/VessMorphoVis#45 · 1 assignee · Opened Nov 15, 2022
Adding support to export a new morphology after fixing existing artifcats Open

enhancement

BlueBrain/VessMorphoVis#44 · 1 assignee · Opened Nov 10, 2022
Adding support to allow the user to select a set of section with a radius range to visualize Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/VessMorphoVis#43 · Opened Nov 10, 2022
Rendering of isometric views of the datasets Open

enhancement

BlueBrain/VessMorphoVis#42 · 1 assignee · Opened Nov 10, 2022
Visualize full brain morphologies with huge sizes Open

enhancement

BlueBrain/VessMorphoVis#41 · 1 assignee · Opened Nov 10, 2022
Center the bevel objects where the morphology is drawn Open

bug enhancement

BlueBrain/VessMorphoVis#37 · 1 assignee · Opened Aug 9, 2022
Draw the bounding box of a given network in the morphology toolbox Open

enhancement

BlueBrain/VessMorphoVis#36 · 1 assignee · Opened Aug 6, 2022
Analysis network tortuosity Open

enhancement

BlueBrain/VessMorphoVis#35 · 1 assignee · Opened Aug 6, 2022
Plotting morphologies with radius above or below a given threshold Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

BlueBrain/VessMorphoVis#34 · Opened Aug 6, 2022
Gallery Open

documentation

BlueBrain/VessMorphoVis#30 · 1 assignee · Opened Dec 16, 2021
Changing from visualizing simulation to visualizing static structures does not provide original color Open

bug

BlueBrain/VessMorphoVis#29 · 1 assignee · Opened Dec 16, 2021
Feature Request: Color coded direction (2D color space: aligned to viewing angle or the perpendicular plane) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/VessMorphoVis#28 · Opened Oct 29, 2021
Issue: discontinuous colormap for 3D directions (angle vs. sine) Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

BlueBrain/VessMorphoVis#27 · 7 comments · Opened Oct 29, 2021
3D rendering Open

enhancement

BlueBrain/VessMorphoVis#26 · 1 assignee · Opened Oct 4, 2021
Feature Request: area-weighted analysis Open

enhancement

BlueBrain/VessMorphoVis#25 · 1 assignee · Opened Oct 4, 2021
Feature Request: extensible color-coding Open

enhancement

BlueBrain/VessMorphoVis#24 · 1 assignee · Opened Oct 4, 2021
Feature Request: logarithmic bin limits for color-coding Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

BlueBrain/VessMorphoVis#22 · Opened Oct 4, 2021
Implement a point cloud visualizer Open

enhancement

BlueBrain/VessMorphoVis#20 · 1 assignee · Opened Sep 22, 2021
Center the loaded VMV files Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

BlueBrain/VessMorphoVis#18 · Opened Aug 23, 2021
Extending the VMV format to load simulation data. Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

BlueBrain/VessMorphoVis#17 · Opened Aug 23, 2021
Adding support to read and write data in Pajeck. Open

enhancement

BlueBrain/VessMorphoVis#15 · 1 assignee · Opened Apr 26, 2021
Further Connected Section options Open

BlueBrain/VessMorphoVis#12 · 1 assignee · Opened Jun 12, 2020
Radii unififcation Open

enhancement

BlueBrain/VessMorphoVis#10 · 1 assignee · Opened Jun 9, 2020
Section connectivity data. Open

enhancement

BlueBrain/VessMorphoVis#9 · 1 assignee · Opened Jun 9, 2020
Fix samples with radii less than a given threshold Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

BlueBrain/VessMorphoVis#8 · Opened Jun 9, 2020
Adding support to bridge disconnected samples. Open

BlueBrain/VessMorphoVis#2 · 1 comment · 1 assignee · Opened Oct 31, 2019

BlueBrain/VessMorphoVis

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