Brain Region colors, readers. plotters
Nobody has claimed this yet.
Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 25/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Active
- Tech stack
- python
- Domain
- data-visualization
Research direction
The issue points to Harris et al. (2021), Wang et al. (2026) Figure 3b, and a CSV behind a private Notion link, but names no code files or tests. Start by checking whether the CSV is accessible and comparing the references to establish the requested color groupings. Clarify the expected behavior before locating the relevant readers and plotters; done means those expectations are explicit and the corresponding change can be verified.
Written by the indexing model from the issue text.
Description
Ashwin suggestion
Harris et al. (2021), which groups cortical areas into 6 modules: https://www.nature.com/articles/s41586-019-1716-z
Wang et al. (2026), Figure 3b, which adds on color bands for broad CCF categories (modules + subcortical areas): https://www.nature.com/articles/s41593-026-02253-9/figures/3
harris_order_smgrouped.csv (private link)
- Dominant language
- Python
- Stars
- 4
- Forks
- 1
- Avg merge
- 2d 6h
- Merged PRs (30d)
- 7
Getting set up
Starts the project's dev container in your browser, under your own GitHub account.
- No Dockerfile or Docker Compose file
- Has a pull request template
- No contributing guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from AllenInstitute/ConnectsCommonConnectivity
-
enhancement io
Difficulty 2/5 1-3 hours Newbie friendliness 65/100
-
bug documentation schema
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
-
bug schema
Difficulty 1/5 Under an hour Newbie friendliness 68/100
-
enhancement schema
Difficulty 2/5 1-3 hours Newbie friendliness 70/100
-
question
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
All issues in AllenInstitute/ConnectsCommonConnectivity
Similar issues
-
cost:cheap practicality:seen-in-the-wild severity:medium
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
fairagro/m4.2_advanced_middleware_api#620 ·
Maintainers usually reply within 1 day
-
area:security effort:S priority:P2 provider:local-libvirt status:ready type:docs
Difficulty 2/5 1-3 hours Newbie friendliness 75/100
randomparity/kdive#3495 ·
Maintainers usually reply within 1 day
-
Difficulty 2/5 1-3 hours Newbie friendliness 82/100
microsoft/markitdown#2820 ·
Maintainers usually reply within 1 day
-
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
Maintainers usually reply within 1 day
-
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
Maintainers usually reply within 2 days