pyro-ppl/pyro

extending Predictive to support sampling by plate name

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#2,783 创建于 2021年3月16日

 (5 条评论) (1 个反应) (0 位负责人)Python (981 个派生)batch import
discussionenhancementhelp wanted

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描述

Following our earlier discussion with @fritzo and @adamgayoso , creating this issue. Would be great if Predictive class can support sampling of all variables in a given plate, automatically pulling all site values in a given plate(plate_name) or all sites not is that plate, including both samples and observed values:

trace = poutine.trace(model).get_trace(*args, **kwargs)  # you'll need to fill in args,kwargs
cell_samples = {
    name: site["value"]
    for name, site in trace.nodes.items()
    if site["type"] == "sample"
    if any(f.name == plate_name for f in site["cond_indep_stack"])
}

This functionality would simplify dealing with local variables within a minibatch plate, by making it easy to do separate predictive calls for the minibatch plate variables and global variables.

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