How to deal with assembly binding redirects?

Larger applications consisting of multiple assemblies these days usually have binding redirects in place. As far as I can tell this leads to ILSpy not being able to resolve references (or sometimes pulling in duplicate assemblies with different versions from the GAC) and generally a lower quality of the decompiled code.

Am I missing anything in how to deal with assembly-setups requiring binding redirects? Otherwise I think its time to consider this as a new feature, going forward with nuget based packaging I think redirected bindings will become much more common than they were in the past.