SciML/Catalyst.jl

add common mistakes documentation

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#1,316 创建于 2025年8月8日

 (0 条评论) (0 个反应) (0 位负责人)Julia (81 个派生)github user discovery
good first issue

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描述

There are certain mistakes / misunderstandings that seem to commonly arise for newer users. We should add a common mistakes page and link it prominently from the tutorials.

Examples include

  1. Using @species and @parameters outside of @reaction_network and not understanding that these are actually completely unconnected.
  2. Similarly for defining t outside of @reaction_network.
  3. Using interpolation when it isn't needed (or if it is needed not using it sufficiently in that interpolation of only expressions but not external variables/species ends up being used which is like point 1. above).
  4. Callback and VariableRateJump saving controls, see https://discourse.julialang.org/t/memory-issues-for-long-ssa-simulations-with-mass-action-jumps/133530

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