r-bioinformatics/edgePy

design testing procedures

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#10 建立於 2018年5月16日

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描述

Design procedures for testing the analysis workflow and comparing it to the edgeR/limma/Glimma R implementation so that we can ensure reproducibility, test performance, features, parity, upgrades, etc.

This could possibly include things such as:

  • reproducing DGE analysis from published studies in both the R workflows and the python workflows.
  • performing DGE analysis on publicly available datasets such as human cell line data, public data from GEO, etc, as long as the datasets are openly available to use.

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