Anndata compatible version with spatialdata-io 5.1/5.0

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Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
30/100
Issue type
Bug
Clarity
Needs clarification
Activity status
Stale
Tech stack
python
Domain
data

Research direction

Reproduce the import failure with spatialdata-io and anndata 0.12.6, then compare it with anndata 0.11.3. Start at the sparse_dataset import path mentioned in the report; done means spatialdata-io imports successfully with the supported anndata versions and the compatibility behavior is covered or documented.

Written by the indexing model from the issue text.

Description

Hello, i am facing difficulties importing spatialdata-io with anndata 0.12.6. I am running into a problem with importing sparse_dataset. I noticed the same error problem with 0.11.3 version.

Dominant language
Python
Stars
103
Forks
65
Avg merge
1h 8m
Merged PRs (30d)
3

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